Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016475.1_202016-02-08] 166 sequences; 9,367,240 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq7 109 4e-19 seq14 100 2e-16 >seq2 Length=641799 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||||||| || |||||| || ||||||||||| | Sbjct 409866 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 409925 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| ||| || || || || |||| ||||||||||| |||| Sbjct 409926 AAAGTT--CTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAG 409983 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| ||| || ||| || | | |||| | ||||| Sbjct 409984 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCA 410043 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||||| ||| || ||||| || || || ||||| || || |||||||| ||| || Sbjct 410044 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTGGCT 410099 >seq7 Length=1035456 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||| ||||| || ||||||||| ||||||||||| | Sbjct 572167 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 572226 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||||||| || || || || ||||| || |||||||| ||||| Sbjct 572227 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 572286 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| || ||| || | | | |||| ||| || Sbjct 572287 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 572346 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| |||||| ||||| || || | ||||| || || || ||||| || Sbjct 572347 TCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 572396 >seq14 Length=213732 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 45106 TTCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC 45165 ||| |||||||| | ||||||||||||||| || ||| ||||| ||||| ||||| || Sbjct 213387 TTCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATC 213446 Query 45166 GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || | | |||| |||||||| || || ||||| ||||| || || ||||| || Sbjct 213447 AGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGG 213506 Query 45226 AGGCACACCCTCCTTGTC 45243 ||| | ||| |||||||| Sbjct 213507 AGGAATACCTTCCTTGTC 213524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074400713486