Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016475.1_202016-02-08] 166 sequences; 9,367,240 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq22 289 3e-73 seq24 244 1e-59 >seq22 Length=546675 Score = 289 bits (320), Expect = 3e-73 Identities = 613/901 (68%), Gaps = 19/901 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| || ||||| || | || || || Sbjct 330712 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 330653 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || ||||||||||| || || || || | |||||| || | ||| ||| Sbjct 330652 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGT 330593 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| | ||||| || ||||| || | ||| Sbjct 330592 AGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAG 330533 Query 18850 TTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||||| || || ||||| ||| | | || ||| || | || ||||||| ||||| Sbjct 330532 GAGACAGGAAGAGCGTCTGTGAAGTACCTTTT-TTCGATCTCGACAGCCTCTGTGATAAT 330474 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACATGCA 18966 | |||| | || ||| | | ||| | | ||| ||| | ||| || ||| Sbjct 330473 CTTTTCAACGATTTCCTCACTGGCTC--TATTGTTTAAATGAGAAAATAGCAAGCAAGCA 330416 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||| |||| |||||||||||| | || | ||||| || || || ||||| ||| Sbjct 330415 AAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 330356 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || || ||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 330355 ATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCC 330296 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCA 19145 || || || || || ||||| | | ||| | ||| | ||||| | || | |||||| Sbjct 330295 TCAACAGCAGCGAAGGCAACCAAACGTTCAGC-GAACAATGCATCGTCATCAGAAATCCA 330237 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | ||| ||||| |||||||| | ||| | |||||| || ||||| || | ||| || || Sbjct 330236 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAG 330177 Query 19206 --ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || || | ||| | || |||||| | || | ||| |||| || ||| | || Sbjct 330176 GAATTCAGA--CTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 330119 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||| || || || ||||| || |||||||| ||| ||||||| | | || Sbjct 330118 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 330059 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 || ||| || || |||| ||||| |||||||| || || || ||| || ||||| Sbjct 330058 ACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAG 329999 Query 19384 AATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAAT 19438 || || | || | | | || || |||||||| | ||| || ||||||| | Sbjct 329998 AAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCAT-TATCGTTCATACGATTATTCCAGT 329941 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 ||| | ||| ||| | |||| ||| ||| | |||||||| ||||| || || | | Sbjct 329940 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 329881 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558 | ||||| | ||| ||||| | || | | ||| || | ||||| | | |||||| | Sbjct 329880 TGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAACGACGTTTATTCT 329821 Query 19559 C 19559 | Sbjct 329820 C 329820 >seq24 Length=401274 Score = 244 bits (270), Expect = 1e-59 Identities = 623/945 (66%), Gaps = 6/945 (1%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || ||||| || | ||||| ||||| ||| | || || |||| | || Sbjct 218872 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 218931 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAttnnnnttGTT 47995 |||| || || ||| |||| || |||||| || | || ||| | ||||| Sbjct 218932 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 218991 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| || ||||| || ||||| || || || ||||||||| | || | |||| ||| | Sbjct 218992 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 219051 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||||| | || || || ||| | | || | ||||||| | Sbjct 219052 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 219111 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 || || | |||||||||||| ||||| || | | | |||||| |||| | ||| | Sbjct 219112 GTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGA 219171 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | || | |||||| ||| | || |||||| |||| || | ||| || ||||| | Sbjct 219172 GAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGATCCACAA 219231 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||| || |||| ||| | || || || ||| ||| | || |||| Sbjct 219232 AGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAATATCAAT 219291 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| | | || || ||||||||||| || || || | || | | |||| || ||||| Sbjct 219292 GAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAGGACGTTT 219351 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| ||||| || | ||| | ||||| ||||| | || || | |||||| | ||| Sbjct 219352 GTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTGGAATAAT 219411 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||| || |||| || || || | ||| || ||| | || | |||||| ||| Sbjct 219412 ACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGAAT 219471 Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 || || ||| || ||||| || |||| || |||| |||||| || | ||||| | Sbjct 219472 GTGCAA-ACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAAGTATCGT 219530 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| ||||| || ||||| ||| | || ||||| |||||||| || | Sbjct 219531 AAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACATTTGTGGGT 219590 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAA 48652 || || || | ||||| | || ||||| |||||| | || | |||| || ||| Sbjct 219591 GAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTGACTCATA- 219649 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 || ||||| ||||||||||| | || || ||| || || |||| ||||| Sbjct 219650 -AAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAATGCCGATAGCAACACG 219708 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||| | || | |||||| | ||| ||| || ||| ||| ||| ||| || ||| | Sbjct 219709 CATAATCAAGTGTTGAGGACGTTCTGCAACATTACCATTAATTCTCAGAAGGTAAGATCT 219768 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 |||||| || || || ||||| ||||| || |||||| |||| Sbjct 219769 TTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTCTCTATC 219813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107633624240