Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08]
131 sequences; 9,353,010 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq24 178 2e-39
seq1 105 1e-17
>seq24
Length=546621
Score = 178 bits (196), Expect = 2e-39
Identities = 555/852 (65%), Gaps = 17/852 (2%)
Strand=Plus/Minus
Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||| || || || ||| |||||||||| |||| | || ||||||||||| | || ||
Sbjct 216777 GTACCACGATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGA 216718
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128
| || ||| ||||| || | || ||| | | |||| ||| || | ||| |
Sbjct 216717 AATAGACCTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATT 216658
Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188
|| || ||| | | ||||||||||| | ||| || || || ||||| || || |
Sbjct 216657 CTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTT 216598
Query 125189 GTTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247
| || | ||| | ||| || | | |||| || | ||||||||||| ||||
Sbjct 216597 GGTGGAAAATTTCAGTGCTGAGGTTCAAC-TTCCCGAAGCAAAATGCTTTTACGGTTTCC 216539
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
| |||||||| |||||| | ||||| || | ||||| |||||||| | |||||
Sbjct 216538 AGATCATGATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCA 216479
Query 125308 GCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367
||||| || | | || || || || ||||| || | || | |||
Sbjct 216478 AAGATCCAAAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 216419
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427
|||||||| | |||| || | ||||| ||| ||| | | | || ||| || |
Sbjct 216418 AAAAGGCTGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTT 216359
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || ||||| || || ||||| ||||||||||| || |||||| | ||||| |
Sbjct 216358 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCT 216299
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|| | |||||| | || |||||||| || |||| | || ||| |||| | |||
Sbjct 216298 GGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 216239
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607
||||||| ||||| ||||||||| || || || | | ||| | | |
Sbjct 216238 ACGAGGGATTACACACTGACTTTGC-------TTGCTT-GCTATTTTCT-CATTTAAACA 216188
Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
||| |||| || |||| || || ||| | || || || || ||| ||| ||
Sbjct 216187 ATAGAGCCAGTGAGGAAATCGTTGAAAAGATTATCACAGAGGCTGTCGAGATCGAAAAAA 216128
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|| | || || | || || ||| | | | || |||||||||| | ||||||
Sbjct 216127 GGTACTTCACAGACGCTCTTCCTGTCTCCTTACTGGGGATGAACTGCAGCTTGATGTGCC 216068
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTT 125784
|||| | ||||| || || || | |||||| || | | ||| | ||| | |
Sbjct 216067 AGTATGTTGAGTTCGTTGCTGACAGACTACTG--GTAGCT-CTGGGCAACAAAAAGGTGT 216011
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||||| ||| ||||| ||||| |||||| | ||| || | | ||||| |||||||
Sbjct 216010 ACAACGTCAACAATCCATTTGACTTCATGGAGAACATTTCTTTGGCCGGTAAAACCAACT 215951
Query 125845 TTTTCGAGAAGA 125856
| ||||| ||||
Sbjct 215950 TCTTCGAAAAGA 215939
>seq1
Length=591227
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||| ||||||||||||||||||| || ||| | || | || | ||||| ||||
Sbjct 279576 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 279635
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186
|| |||||||||| | || || || |||||||| | | | ||||| |||||
Sbjct 279636 TGTAAGACAGACTACACTGGACAAGGGTTTGATCAACTTTCTAGGGTAATTGAAACTCTT 279695
Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246
||||||||| || || || || | ||| | ||||||| ||| ||||||| |
Sbjct 279696 CGTACCAATCCATATGACAGAAGAATAATCATGAGTGCATGGAACCCTCCAGATTTTGAG 279755
Query 70247 CAAATGGCACTACCACCGTGTCA 70269
||||||| || ||||| |||||
Sbjct 279756 AAAATGGCTCTCCCACCCTGTCA 279778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057986515560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |