Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08]
131 sequences; 9,353,010 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 1e-32
seq9 134 3e-26
seq101 100 7e-16
seq21 93.3 1e-13
seq27 84.2 5e-11
>seq3
Length=641781
Score = 156 bits (172), Expect = 1e-32
Identities = 170/225 (76%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| ||||| | ||| | ||| ||||||||||||| ||||||||||| |||||| || ||
Sbjct 231932 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 231873
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| ||||| || || ||||| |||||||| ||||| ||| |||||| ||
Sbjct 231872 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 231813
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | ||||| | | || || ||||| |||||
Sbjct 231812 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 231753
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638
|||||||| || || || || || |||||||| |||||| ||
Sbjct 231752 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTG---CATTTTGGC 231711
>seq9
Length=694444
Score = 134 bits (148), Expect = 3e-26
Identities = 167/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
|||||| || ||||| | ||| |||||||| |||| ||||||||||| || ||| || ||
Sbjct 132024 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 131965
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|||||||| ||||| || || || || | ||| || ||||| ||| |||||||||
Sbjct 131964 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 131905
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| |||||||| ||| || |||| |||||| | | || || ||||| || ||
Sbjct 131904 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 131845
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641
|||||||| || | || || || ||||| || |||||| | |||
Sbjct 131844 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTG---CATTTTTGTCTT 131800
>seq101
Length=201
Score = 100 bits (110), Expect = 7e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
||||| | || | ||||||||| || |||||||||| ||||||||||| | ||| ||
Sbjct 112 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 53
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519
|||||||||| ||||| || |||||||| | ||| |||||||| |||
Sbjct 52 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 5
>seq21
Length=213742
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| || || | |||||| || || ||||| |||| ||||||||||| | ||| || ||
Sbjct 213633 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213692
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519
||||||||| ||||| || || ||||| ||||| ||||| || |||
Sbjct 213693 ATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 213738
>seq27
Length=271142
Score = 84.2 bits (92), Expect = 5e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827
|| ||||| || | ||||| || ||||| || | ||| ||| | | ||| || |
Sbjct 182279 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 182220
Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887
||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || ||
Sbjct 182219 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 182160
Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947
| || || || || | || || | ||| |||| || |||||||| | ||| | ||
Sbjct 182159 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 182100
Query 167948 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 167991
|| |||||| ||| || || || || || |||||||| || ||
Sbjct 182099 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 182056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178919621253777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |