Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08] 131 sequences; 9,353,010 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq27 215 2e-50 seq11 102 2e-16 seq35 100 8e-16 seq3 98.7 3e-15 seq24 89.7 2e-12 >seq27 Length=271142 Score = 215 bits (238), Expect = 2e-50 Identities = 626/947 (66%), Gaps = 25/947 (3%) Strand=Plus/Minus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| ||||||| |||| ||||| || |||||||| | | |||||| ||||| Sbjct 182403 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 182344 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 |||||||| |||||||| || ||| || || ||||||||||||| ||| |||| Sbjct 182343 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 182284 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 |||||||||||| || || ||| |||| || || || || | ||||| || || || Sbjct 182283 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 182224 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGACTCATATTTCA 155820 ||| || | |||| || || | |||| | | |||||| || ||| | Sbjct 182223 GTACCAAAGCTTTTGGGCTTTGATG-GTTTGTCTTCCACGACCTTCCTTTTCGTATCTTT 182165 Query 155821 TATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGG----CACTTAT 155874 |||| ||| || || || || || || || ||||| ||||| Sbjct 182164 CGTACAA--TTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTT-- 182109 Query 155875 CGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAATACATCACTC 155933 || | ||||| | |||| ||| | | | ||| | | ||| || | |||| Sbjct 182108 --GGAGAGAACAGGGTCCAATCGCCATT-CTGTTCTACTCTTTTCATGAACAGATCAGGG 182052 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCG 155992 ||| | ||| ||| | ||| || || | ||| |||||| | || || ||||| || Sbjct 182051 ATCCACAAAGCGGGGAATAAGTCTCTAGC-TCTGATCTCCTCTTTACCATGGTTCTTACG 181993 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 | || | ||| | || || | ||| |||||||| |||| |||||| ||| Sbjct 181992 AATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACC 181933 Query 156053 ATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 | | ||| ||||| || || ||||| |||||||| || |||||||| | | ||| Sbjct 181932 AGGACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCAT 181873 Query 156110 AGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAAC 156169 |||||||||||||| ||||| || || || || ||| | || || | | |||| Sbjct 181872 TGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAAT 181813 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 ||||||||| || | ||||| ||||| | ||| || ||| ||| |||||||| | Sbjct 181812 ATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAA 181753 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 ||||| | |||| |||||||| || ||||| ||| | | || | || || | Sbjct 181752 AGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACAT 181693 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 ||| || | || || |||||||| || || ||||| | |||||| | |||||||| | Sbjct 181692 TTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTG 181633 Query 156350 AGACATATAATCGTATGTCTCCTTAA-TCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408 | |||| | | || || || ||| |||| ||| | | || ||||| | ||||| Sbjct 181632 ACTCATAAAGTTATAAGTTTCAATAACTCTT-GCAATGTCATCACCATGAATGCCGATAG 181574 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGG 156467 || | ||| || || |||||||| ||| ||| || | |||| ||||| ||||||| Sbjct 181573 CAACACGCATAATCAAGTGTTGAGGACGTTCTGCAA-CATTACCATTAATTCTCAGAAGG 181515 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || | | ||||| || || || || || || | | || |||| || Sbjct 181514 TAAGATCTTTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTC 181468 >seq11 Length=309373 Score = 102 bits (112), Expect = 2e-16 Identities = 380/579 (66%), Gaps = 30/579 (5%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||||||||| || | | ||||||||||||| || || | |||| ||| | || Sbjct 83214 ACACACATGTACTCGGAAAGCATCAGATGCTTCCATTAATCTTTCCTTCAAGAAACCAGC 83155 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||| | ||||||||| || | ||||| || |||||||||||||||||||| || Sbjct 83154 GGCACCGTGAGCAATCATACAGTCTCTTTCCATCTCTCCGAAACGAAGACCACCATCACG 83095 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT-GAGATTAACCATAGGACCGATGGAGCGGCTAT 251602 | ||||| || |||| || | || ||| | | ||| || ||| | | || Sbjct 83094 GGATCTACCTTCTACAGGTTGTCTGGTCAAGACT-TGTACAGGTCCTCTGGCTCTGGCAT 83036 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGC 251662 | |||||||| |||||||| | || | |||||| ||| || || | ||| | | Sbjct 83035 GAATCTTATCATCCACCATATGTCTCAGTCTCTGGTAATATGTTGGTCCAAAGAATA-CC 82977 Query 251663 TCGAAGGCAT---TTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 | | | ||| || | ||||| | | || ||||| ||||| ||| |||||| Sbjct 82976 TGG--GCCATTAATTTTTTACCAGTGTGTCCATTGTACATTACTTCAAATCCTCTAGATT 82919 Query 251720 CATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAAC 251776 ||| ||| | || | || | ||| | || ||| | || ||| || |||| Sbjct 82918 GATACCCATTATCCCTCAGAAGGTTGGAAACCGCAT--CCACTGTTAAATCTG-TAAA-- 82864 Query 251777 TGGTG--CCGTCTCCGTAAAGAC--CCATTTGAATCAAC---ACTTTGCCTAAAAGTGTC 251829 ||||| |||| || | | || | | | ||| |||| ||| || ||| | Sbjct 82863 TGGTGTAGCGTCACCTTCATAACCTCTAATAGAACCAACCTTACTCAGC--AAA---CAC 82809 Query 251830 TCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCG 251889 || | | || || | ||||||||| ||||||||||| || || || || | ||| Sbjct 82808 TCAATTAAGTGCGCAACCGTCATACGAGAAGGAATAGCATGTGGGTTAATAATCAAATCG 82749 Query 251890 GGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGT 251948 || | || || ||| |||| |||||||| | | | | |||| | ||||| || Sbjct 82748 GGAACGATACCCTCTGCACTGAATGGCATATCTTCGTGC-CTATAAGTAACACCAATGGT 82690 Query 251949 TCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || |||||||| || |||||||||||||| Sbjct 82689 ACCCTTCTGACCGTGACGGGAGGCAAACTTATCACCAAT 82651 >seq35 Length=60789 Score = 100 bits (110), Expect = 8e-16 Identities = 309/470 (66%), Gaps = 21/470 (4%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAAT 288942 || || | ||| ||||||||||| | ||||| ||||||| | || | | ||| Sbjct 57019 TCCAAAACATCAGCTCTGTTTGTACCAGCCAAGACAACAACATGGTCAGAACTATCAAAA 56960 Query 288943 CCATCCATACTTGT-TAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC- 289000 |||||||| || | || | ||||| | ||| || ||||||| || ||||| Sbjct 56959 CCATCCAT-CTCGACTAGTAGCTGATTTAAAGTTGCCTCTTTTTCATCGTT---ACCTCC 56904 Query 289001 --TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | ||| ||| | | || | || | ||| | ||||||||||| |||| ||| || Sbjct 56903 CATGGAACCACTCTTA---CTACGTTCTCGACCGATCGCATCAATTTCATCAACGAATAT 56847 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCA 289116 | | | || | | | ||| || |||| |||||| || | || ||||| |||||| Sbjct 56846 GATAGATGGCGCCATCTTTCTAGC--TTGCTGAAATAAATCACGAACTCGGGAAGCTCCA 56789 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCT 289176 | ||| ||| ||||||| ||||| |||||| | || || | |||| || ||| Sbjct 56788 ACACCCACAAACATTTCCACAAACTCAGAACCCGAAACAGACAAAAATGGAACTCCAGCT 56729 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 ||||| || |||| |||| || | ||||||||| || || || || | | | ||| Sbjct 56728 TCGCCAGCAGTTGCCTTCGCTAGCAATGTCTTACCAGTACCTGGAGGAC---CAGAAAGA 56672 Query 289237 A---CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 | | || |||| | |||||| || || |||||||| ||| |||| | || Sbjct 56671 ATTGCACCTCTTGGAATTTTTGCTCCTAGTTTCTCATATTTCTTAGGATTCTTCAGGAAC 56612 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || | |||| || ||| | ||| || ||||| || || || || || Sbjct 56611 TGAACGAATTCCATAATTTCTTCTTTAGCTTCATCGCAACCCGCCACGTC 56562 >seq3 Length=641781 Score = 98.7 bits (108), Expect = 3e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||| | ||||||||||||||||||||| ||| || ||||| |||||||||||||| | Sbjct 527490 CTTCACTAAACGACGCTGAATATAACCTGTTTCAGCAGTTTTCACAGCTGTATCAATCAA 527549 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||| |||||||| |||| || || ||||| | ||||| ||| Sbjct 527550 ACCTTCACGACCAGCCATGGCGTGAAAGAAGAACTCTTGCGG 527591 >seq24 Length=546621 Score = 89.7 bits (98), Expect = 2e-12 Identities = 288/436 (66%), Gaps = 22/436 (5%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGG 133289 || || |||||||| ||| |||||||| |||||| || | ||| | || | | Sbjct 216638 GCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAAAAT--TTCAGTG 216581 Query 133290 GAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATA 133349 || |||||||| ||||||| |||||| || | ||||| |||||| || | Sbjct 216580 CTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACA 216521 Query 133350 TCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG- 133408 | || || || || || || |||||||||||||||||||| |||| ||| Sbjct 216520 TTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGA-----TCCAAAAGA 216466 Query 133409 --CACAA--ACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACT 133463 | || || ||||| |||| | | || |||| ||||| ||| | || |||||| Sbjct 216465 GTCTGAATTCCTGTTCAATGCCA-TCGAGACCATTCCATGTATCAAAGAAAAGGCTGACT 216407 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 |||| || | |||||| || | ||| || ||| ||| | ||||| || | Sbjct 216406 GGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCG 216347 Query 133524 CTGTAGTAGAGGGCA--tttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAA 133580 ||| || ||||| | || ||||||| | | || ||| ||||| || ||| | || | Sbjct 216346 CTGCTGTTGAGGGTATCTTCTTTTCAG-GAT--CTTTTGCTTCTATCTTCTGGTTGAAGA 216290 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 || | ||| | | || || || || || || || ||||||| || ||||||| | Sbjct 216289 AGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGAT 216230 Query 133641 TTCACACCGAATTTGC 133656 | ||||| || ||||| Sbjct 216229 TACACACTGACTTTGC 216214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815129646147