Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08]
131 sequences; 9,353,010 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq21 167 3e-36
seq3 161 1e-34
seq22 156 5e-33
seq9 140 4e-28
>seq21
Length=213742
Score = 167 bits (184), Expect = 3e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || |||||||| ||||||||||| ||||||
Sbjct 213620 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213561
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | || |||| ||||| |||||||| || |||||||| ||||||
Sbjct 213560 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213501
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||||||||| || || | | | || || | || || |||
Sbjct 213500 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 213441
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640
| |||||||||||||||||||| | || || | ||| | ||||| || |||
Sbjct 213440 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGGTGAACTTT 213386
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571
||||||| || ||||| ||||| || ||||||||||||||||| || |||| | | || |
Sbjct 213742 TTCCTCCTGATCAGCAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTC 213683
Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
| | ||||| || |||| ||||||||||| || ||
Sbjct 213682 TTTCTGACTACAACATCCAGAAGGAATCCACCCTCCA 213646
>seq3
Length=641781
Score = 161 bits (178), Expect = 1e-34
Identities = 155/199 (78%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| |||||||| |||||||| || | ||||| |||||
Sbjct 231716 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 231775
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 231776 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 231835
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||||| || ||||||||||||||| | ||||||| | | || | | ||||| ||
Sbjct 231836 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 231895
Query 27585 TGTCCAAAAGGAATCCACT 27603
|||||||||| || |||
Sbjct 231896 CATCCAAAAGGAGTCTACT 231914
>seq22
Length=97383
Score = 156 bits (172), Expect = 5e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || |||||||| ||||||||||| ||||||
Sbjct 309 AATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 250
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | || | || ||||| || ||||| || |||||||| |||||
Sbjct 249 AGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGACCA 190
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||| |||||||||||||||||||||| || || | | | || || | || || ||
Sbjct 189 GCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAA 130
Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608
|||||||||||||||| || ||
Sbjct 129 CATCCAAAAGGAATCCACCCTCCA 106
>seq9
Length=694444
Score = 140 bits (154), Expect = 4e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || |||||||| | ||||| ||||||||||| | || || |||||
Sbjct 131808 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCCTC 131867
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| | ||| | || ||||| |||||||| ||||||||||| |||||
Sbjct 131868 CGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 131927
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | |||||||||||||||||||| || || | | | || || | ||||| ||
Sbjct 131928 ACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTACAA 131987
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| ||||| || ||| | || || ||
Sbjct 131988 CATCCAGAAGGAGTCTACTTTGCACCTGGT 132017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309466116720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |