Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08]
131 sequences; 9,353,010 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq21 165 2e-35
seq9 159 7e-34
seq22 158 3e-33
seq3 156 9e-33
seq23 131 4e-25
>seq21
Length=213742
Score = 165 bits (182), Expect = 2e-35
Identities = 187/250 (75%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 282853 CCTAAAAAATAAAAC---GTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTT 282909
|||||| ||| ||| || |||||| | || | | ||||| || | ||| ||
Sbjct 213371 CCTAAACAATTGAACAAAGTTCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATT 213430
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
| ||||| || ||||| |||| ||| || | || || || ||||| || || || ||||
Sbjct 213431 CCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGA 213490
Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029
|||||||||| |||||| |||||||| ||||||||||| ||||| | ||| ||| |||
Sbjct 213491 TCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTAT 213550
Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
| ||||| || || | || || || |||||||| |||||||| || | |||||| ||||
Sbjct 213551 CAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGA 213610
Query 283090 ATATCTGCAT 283099
| ||||||||
Sbjct 213611 AAATCTGCAT 213620
>seq9
Length=694444
Score = 159 bits (176), Expect = 7e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | || | || ||||| || || || || || ||||||||||||||||
Sbjct 132036 ACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGA 131977
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || | || || || ||||| || || ||||| |||||||||||||||||| ||
Sbjct 131976 CAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 131917
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||||||||| ||||| | || || | ||||| ||||| || | |||||
Sbjct 131916 AATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 131857
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||| | || || |||||||| || || ||||| ||||| |||||||||||
Sbjct 131856 TTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 131806
>seq22
Length=97383
Score = 158 bits (174), Expect = 3e-33
Identities = 152/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| |||||||||||||| |||| ||| || | || || || ||||| || || |||||
Sbjct 117 TTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 176
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|| |||||||| |||||| |||||||| ||||| ||||| ||||| | ||| || |
Sbjct 177 AATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATT 236
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||| |||||||| || | || || || |||||||| |||||||| || | || |||||
Sbjct 237 ATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAAC 296
Query 283088 GAATATCTGCATTTT 283102
|| |||||||||||
Sbjct 297 AAAAATCTGCATTTT 311
Score = 86.0 bits (94), Expect = 1e-11
Identities = 140/198 (71%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 301477 CATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTAC 301536
||||||||| || || | | ||||||| |||| |||| ||||||| || |||||
Sbjct 45992 CATGGAGAATGCTTTGTCCTGAACGATGGTGGTGAAGTCGATTTGGATCTCGGAAACTAC 46051
Query 301537 GAACGTTTCACTTCATTAAC-CCTTAAGC-GTGAAAGTAATTTTACGACTGGCCAAGTTT 301594
||| | | | ||| || | || ||| | | || || |||| ||||| | || |
Sbjct 46052 GAAAGAT--ATCTCAATATCACCCTAACCAGAGATCACAACATTACCACTGGTAAGGTCT 46109
Query 301595 ATTTAAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTG 301654
||| ||| ||||||||||| ||| | | ||| |||||||||||| || || || ||||
Sbjct 46110 ATTCAAAGGTTATCGAAAAGGAAAGAAACGGTGACTATCTCGGAAAAACTGTCCAGGTTG 46169
Query 301655 TTCCCCACATCACCGATG 301672
| || ||| | ||| |||
Sbjct 46170 TCCCTCACTTAACCAATG 46187
>seq3
Length=641781
Score = 156 bits (172), Expect = 9e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | || | ||| |||| || || || || |||||||||||||||||||
Sbjct 231944 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 231885
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | |||||||| | ||| || || |||||||||| ||| ||||||||| ||
Sbjct 231884 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 231825
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | || |||||||| |||| || ||
Sbjct 231824 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 231765
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | ||||| |||||||| || | ||||| ||||| || ||||||||
Sbjct 231764 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 231714
>seq23
Length=152067
Score = 131 bits (144), Expect = 4e-25
Identities = 184/256 (72%), Gaps = 2/256 (1%)
Strand=Plus/Minus
Query 316947 AATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGC 317006
|||||||||||| | || |||| | ||| || || |||| ||| ||||| || || |
Sbjct 47899 AATGAAGTCAACAGTGGAGGTGTCGGCTTCAGAACCATCGATGTCGTGCTCGACGTAGAC 47840
Query 317007 AGTTTTCAGAAT-ATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCA 317065
|||| | | | | ||| | | ||||| || || | |||||||| |||| || ||||
Sbjct 47839 AGTTCT-ACATTCATCTTGAGATGGGAAGCCCTCAACTTGACCGTTGGCAATAGCTCTCA 47781
Query 317066 TCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCA 317125
||| || ||||| |||||||| || || || || |||||||| || | | ||||||
Sbjct 47780 TCAAAGTTGACTTACCAGCACCGTTAGGACCACAGAGACCATAACGTCTAGCTCTCTTCA 47721
Query 317126 GATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAAT 317185
| || | || |||||||| | |||||| |||| || ||||| ||||||||||| |
Sbjct 47720 AACGGAATTGAGTCTTGTTCAGCAAGATCTTAGCACCGTAAGCCAGGGAGAACTCACAGT 47661
Query 317186 CACACAGGTCCTCGCC 317201
||| || || || ||
Sbjct 47660 TACATAGATCTTCACC 47645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046737443113674
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |