Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016485.1_202016-02-08]
131 sequences; 9,353,010 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq9 127 1e-24
seq21 114 9e-21
seq3 114 9e-21
seq22 104 2e-17
>seq9
Length=694444
Score = 127 bits (140), Expect = 1e-24
Identities = 171/234 (73%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || ||||||| ||||| |||||||| | || |||||| ||||||||||| ||
Sbjct 132038 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCA 131979
Query 44168 G--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
| ||||| | |||| ||||| ||||| || ||||| |||||||| || || || |
Sbjct 131978 GACAGAGTT--CTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAG 131921
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283
||| | |||||||| || ||||| ||| || ||| | |||||||||| |||
Sbjct 131920 GAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGT--CGATGGTGTCGGAGGA 131863
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||| ||||| ||||| || || | |||||| ||||| || |||||
Sbjct 131862 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 131809
>seq21
Length=213742
Score = 114 bits (126), Expect = 9e-21
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169
|| ||||| ||||| || |||| |||||| ||| |||||||| || |||||||| |
Sbjct 213394 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213453
Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
||||| | |||| ||||| ||||| || || ||||||||||| ||||| || | ||
Sbjct 213454 AGAGTT--CTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 213511
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCC 44287
| | ||||||||| || ||||| | || | ||| | || || || | || ||
Sbjct 213512 GAATACCTTCCTTGTCTTGAATCTT-AGATTTGACGTTATCAATAGTATCTGATGACTCT 213570
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| || || || ||||| ||||| || |||||
Sbjct 213571 ACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213620
>seq3
Length=641781
Score = 114 bits (126), Expect = 9e-21
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168
|| ||||||| ||| | |||| ||| | || |||||||||||||||||| || |
Sbjct 231943 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 231884
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
|||| | | || |||| ||||| || |||||||||| |||||| || || | ||
Sbjct 231883 AAAGTT--CTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAG 231826
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| | || ||||| ||| ||||| ||| | | | || ||||||| || ||||
Sbjct 231825 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCA 231766
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| || || ||||| || || |||||||| ||||| ||||||||
Sbjct 231765 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 231717
>seq22
Length=97383
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || || | ||| | |||| ||| || ||| ||||||||||||||||||||
Sbjct 78 CATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATC 137
Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
| ||||| | |||| ||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 138 AGAAAGAGTT--CTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCA 195
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284
| ||| | ||||||||| || ||||| || | | | || ||||| | ||
Sbjct 196 GGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGAC 255
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| | || || ||||| || || ||||| || || || || |||||
Sbjct 256 TCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989825252827
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |