Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016495.1_202016-02-08] 134 sequences; 9,351,186 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28 212 8e-50 seq25 109 7e-19 >seq28 Length=271146 Score = 212 bits (234), Expect = 8e-50 Identities = 791/1227 (64%), Gaps = 25/1227 (2%) Strand=Plus/Plus Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 ||||||| |||| | || | | || || || || |||||||| | |||||||| ||| Sbjct 88373 TCCCACAAGTCATATTGCAAAATGCCCTGAGATGCTGGAGAACCTTGGAAGGTTTCGTAG 88432 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 110986 | |||| | | || ||||| | || |||| | ||| || || || |||||| Sbjct 88433 GCTCCTTCTTCGACGGCTAATTCGTTGGAGGCTTCCAAAGCTGCATGGTAGATAGTTTCA 88492 Query 110987 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 111046 || || || ||| | || |||||||| |||||||| | | || ||| Sbjct 88493 AAAATCTGAATATTAAGCTGTTTGGCTTCTGGAGAATCAAAAGGAATTCTCAACTTCATA 88552 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || |||| || | |||||||||||||| | | |||||||| | |||||||| || | Sbjct 88553 AAAGCATCAGCTAAACCTTGAACACCCACAGCTATAGGTCTATTACGCATATTCGATCTC 88612 Query 111107 CGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165 | || ||| |||||| |||||||||||||| || | || ||| | || ||||| Sbjct 88613 CTAGCT-TCTGGAACGGGGTAAAAATTTCTGTCGATAATTCTGTTCAAGTTACGAGTAAC 88671 Query 111166 AATCTTTGTGATTTCATGAAGTTTTTCATA-----ATCAAAAGTGCGAGTCTCTTC---A 111217 | || ||||||||||| || |||||| | | || ||| |||| || || Sbjct 88672 CACTTTGGTGATTTCATGCAGCTTTTCAAAGTTGTACCAGCAGT--GAGTATCATCGGTT 88729 Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 | ||| | |||||| || || || ||||| || || ||||| ||||| ||| Sbjct 88730 TCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAA 88789 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 | ||| || | |||||| || | ||| || ||||| ||||| ||||| ||| Sbjct 88790 GAGTATTCAACAATTTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGG 88849 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 ||| | || ||||| || |||||||| || |||||| | || || || || || || ||| Sbjct 88850 TTAGTTTTTTTGTTACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGT 88909 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCT 111455 | | || || || | ||||| | ||| || | || | | | || || | Sbjct 88910 GCCTCAAGGATGGCGTACCAAAGCTTTTGGGCTTTGATGGTTTGTC--TTCCACGACCTT 88967 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || ||||| || ||| | | ||||| || || || |||||| || || | Sbjct 88968 CCTTTTCGTATCTTTCGTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAG 89027 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || | |||| |||| || | ||| | ||| | || || | |||||||| | Sbjct 89028 GAGCTTCACTTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACA 89087 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 111634 | || || ||||||| | | || | |||||| | | || ||| || | ||| ||| Sbjct 89088 GATCAGGGATCCACAAAGCGGGGAATAAGTCTCTAGCTCTGA-TCTCCTCTTTACCATGG 89146 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | |||| ||| | | ||| || || ||||||||||| | || | || Sbjct 89147 TTCTTACGAATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCA 89206 Query 111695 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 | | || | || | ||| |||| | ||||| || || ||| ||| || || Sbjct 89207 AATGCACCAGGACGTTTG-TTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGAC 89265 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 | | ||||||||||||||||| || ||| || || || ||| ||| | Sbjct 89266 CCTCACCATTGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGT 89325 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | | || ||| ||||||| ||||| || ||||| || |||||| ||||| Sbjct 89326 GGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACA 89385 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 ||| | | ||| | || || || | |||||||| ||| |||| | | ||| || Sbjct 89386 TTCCTTCAAAGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACA 89445 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| || || || |||||||| || || || || || | || ||| |||| Sbjct 89446 TGATGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAA 89505 Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 |||| | || ||| || || || || | || ||||||| || || || | Sbjct 89506 -ATACTTCTGACTCATAAAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAA 89564 Query 112050 TGCCGATTGCGACCCGCATGAACATGT 112076 ||||||| || || ||||| | || || Sbjct 89565 TGCCGATAGCAACACGCATAATCAAGT 89591 >seq25 Length=536034 Score = 109 bits (120), Expect = 7e-19 Identities = 170/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||| |||| | ||||||| ||||| |||||| | |||| Sbjct 216172 GCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCT 216231 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| | |||||||||||| | |||| ||| || || || || |||||||| Sbjct 216232 GGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCA-AAAGATCCTGAAAAGAAGAT 216290 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834 |||||| ||| || || |||| | ||||| ||||| | | | | | |||| Sbjct 216291 ACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAA----CAATGCATCGTCATCAG 216346 Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || |||| |||| ||||| | ||||| | | |||||||| | || | |||||| Sbjct 216347 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGC 216404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030948046400