Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016495.1_202016-02-08]
134 sequences; 9,351,186 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq28 212 8e-50
seq25 109 7e-19
>seq28
Length=271146
Score = 212 bits (234), Expect = 8e-50
Identities = 791/1227 (64%), Gaps = 25/1227 (2%)
Strand=Plus/Plus
Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926
||||||| |||| | || | | || || || || |||||||| | |||||||| |||
Sbjct 88373 TCCCACAAGTCATATTGCAAAATGCCCTGAGATGCTGGAGAACCTTGGAAGGTTTCGTAG 88432
Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 110986
| |||| | | || ||||| | || |||| | ||| || || || ||||||
Sbjct 88433 GCTCCTTCTTCGACGGCTAATTCGTTGGAGGCTTCCAAAGCTGCATGGTAGATAGTTTCA 88492
Query 110987 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 111046
|| || || ||| | || |||||||| |||||||| | | || |||
Sbjct 88493 AAAATCTGAATATTAAGCTGTTTGGCTTCTGGAGAATCAAAAGGAATTCTCAACTTCATA 88552
Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106
|| |||| || | |||||||||||||| | | |||||||| | |||||||| || |
Sbjct 88553 AAAGCATCAGCTAAACCTTGAACACCCACAGCTATAGGTCTATTACGCATATTCGATCTC 88612
Query 111107 CGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165
| || ||| |||||| |||||||||||||| || | || ||| | || |||||
Sbjct 88613 CTAGCT-TCTGGAACGGGGTAAAAATTTCTGTCGATAATTCTGTTCAAGTTACGAGTAAC 88671
Query 111166 AATCTTTGTGATTTCATGAAGTTTTTCATA-----ATCAAAAGTGCGAGTCTCTTC---A 111217
| || ||||||||||| || |||||| | | || ||| |||| || ||
Sbjct 88672 CACTTTGGTGATTTCATGCAGCTTTTCAAAGTTGTACCAGCAGT--GAGTATCATCGGTT 88729
Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277
| ||| | |||||| || || || ||||| || || ||||| ||||| |||
Sbjct 88730 TCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAA 88789
Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337
| ||| || | |||||| || | ||| || ||||| ||||| ||||| |||
Sbjct 88790 GAGTATTCAACAATTTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGG 88849
Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397
||| | || ||||| || |||||||| || |||||| | || || || || || || |||
Sbjct 88850 TTAGTTTTTTTGTTACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGT 88909
Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCT 111455
| | || || || | ||||| | ||| || | || | | | || || |
Sbjct 88910 GCCTCAAGGATGGCGTACCAAAGCTTTTGGGCTTTGATGGTTTGTC--TTCCACGACCTT 88967
Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515
|| ||||| || ||| | | ||||| || || || |||||| || || |
Sbjct 88968 CCTTTTCGTATCTTTCGTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAG 89027
Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575
| || | |||| |||| || | ||| | ||| | || || | |||||||| |
Sbjct 89028 GAGCTTCACTTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACA 89087
Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 111634
| || || ||||||| | | || | |||||| | | || ||| || | ||| |||
Sbjct 89088 GATCAGGGATCCACAAAGCGGGGAATAAGTCTCTAGCTCTGA-TCTCCTCTTTACCATGG 89146
Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694
|| || | |||| ||| | | ||| || || ||||||||||| | || | ||
Sbjct 89147 TTCTTACGAATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCA 89206
Query 111695 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750
| | || | || | ||| |||| | ||||| || || ||| ||| || ||
Sbjct 89207 AATGCACCAGGACGTTTG-TTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGAC 89265
Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810
| | ||||||||||||||||| || ||| || || || ||| ||| |
Sbjct 89266 CCTCACCATTGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGT 89325
Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870
||| | | || ||| ||||||| ||||| || ||||| || |||||| |||||
Sbjct 89326 GGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACA 89385
Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930
||| | | ||| | || || || | |||||||| ||| |||| | | ||| ||
Sbjct 89386 TTCCTTCAAAGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACA 89445
Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990
||||| || || || |||||||| || || || || || | || ||| ||||
Sbjct 89446 TGATGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAA 89505
Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049
|||| | || ||| || || || || | || ||||||| || || || |
Sbjct 89506 -ATACTTCTGACTCATAAAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAA 89564
Query 112050 TGCCGATTGCGACCCGCATGAACATGT 112076
||||||| || || ||||| | || ||
Sbjct 89565 TGCCGATAGCAACACGCATAATCAAGT 89591
>seq25
Length=536034
Score = 109 bits (120), Expect = 7e-19
Identities = 170/238 (71%), Gaps = 10/238 (4%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| | ||||| |||| | ||||||| ||||| |||||| | ||||
Sbjct 216172 GCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCT 216231
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| | |||||||||||| | |||| ||| || || || || ||||||||
Sbjct 216232 GGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCA-AAAGATCCTGAAAAGAAGAT 216290
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834
|||||| ||| || || |||| | ||||| ||||| | | | | | ||||
Sbjct 216291 ACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAA----CAATGCATCGTCATCAG 216346
Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|| |||| |||| ||||| | ||||| | | |||||||| | || | ||||||
Sbjct 216347 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGC 216404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628030948046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |