Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08]
127 sequences; 9,351,979 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq17 118 9e-22
seq4 118 9e-22
seq13 104 2e-17
>seq17
Length=213856
Score = 118 bits (130), Expect = 9e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
||||| |||||||| || ||||| | ||||| | ||||||||||| || ||||||||
Sbjct 3 TTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGACACTATT 62
Query 25068 GAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126
|| | ||| | || | ||| ||||| ||||| ||||| ||||| || || || |
Sbjct 63 GACAACGTAAAGTCTAAGATTCA-AGACAAGGAAGGTATTCCTCCTGATCAGCAACGTCT 121
Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|| ||||| || || ||| | ||||||| | | ||| | || ||||| || || ||
Sbjct 122 GATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAGAA 181
Query 25187 AGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || || || || ||||| ||||||| ||
Sbjct 182 GGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGG 220
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || ||||| | ||||| | || || ||||| ||
Sbjct 222 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 281
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| || | || | ||| ||||| ||||| ||||| |||||
Sbjct 282 GATACTATTGATAACGTCA---AATCTAAGATTCAA-GACAAGGAAGGTATTCCTCCTGA 337
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || || || ||| | ||||| | | | ||| | |||||
Sbjct 338 CCAGCAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 397
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||| |||||||| || || || || |||| || ||||| ||
Sbjct 398 CAATATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGG 448
>seq4
Length=588436
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || |||||||| | |||||||| | ||||| | || |||||||| ||
Sbjct 178348 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 178407
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | ||| | || | ||| ||||| || || ||||| |||||||
Sbjct 178408 CGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGACC 178466
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || || ||||| || |||| | | ||| || || ||||
Sbjct 178467 AACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACA 178526
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || || || | || || || || || | ||||| ||
Sbjct 178527 ACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 178575
>seq13
Length=1082976
Score = 104 bits (114), Expect = 2e-17
Identities = 148/204 (73%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || ||||| || |||||||| | || || | ||||| |||||
Sbjct 543132 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 543073
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| ||||| ||||| || || ||| | || | ||| ||||| ||||| ||||| ||
Sbjct 543072 CTCCGACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGAATTCCTCC 543016
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||||||| || | |||||||| || || ||| | ||||| | | | ||| || ||
Sbjct 543015 TGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGA 542956
Query 25172 TTACAATATTCAAAAAGAATCCAC 25195
||||| || || || || || ||
Sbjct 542955 CTACAACATCCAGAAGGAGTCTAC 542932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327329289505
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |