Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08] 127 sequences; 9,351,979 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq17 118 1e-21 seq16 118 1e-21 seq13 107 2e-18 seq4 95.1 1e-14 seq112 89.7 5e-13 >seq17 Length=213856 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| || || |||| ||| Sbjct 424 TGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 365 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 364 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 305 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || || || ||||| || || ||||| | || || || || Sbjct 304 GATTTGA-CGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGT 246 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || ||||| ||||| Sbjct 245 TAGAGTCTTGACGAAAATCTGCAT 222 >seq16 Length=97376 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || ||||| | ||| || || |||| ||| Sbjct 97271 TGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 97212 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || || ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 97211 TTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTG 97152 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| || ||||| || || ||||| | || || || ||| Sbjct 97151 GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTT 97092 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||| ||||| Sbjct 97091 AGGGTTTTAACAAAAATCTGCAT 97069 >seq13 Length=1082976 Score = 107 bits (118), Expect = 2e-18 Identities = 308/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAA-AACGCAA 123361 || || |||||||| || ||||||| || |||| ||||| || || || | || | | Sbjct 40968 GCCATTTATCTAGAGCCATGGCACGAAGAAGTGTTTGATTTGTTGAACTTGAGAAAGAAT 40909 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 || || ||| || | | |||| | ||||| || |||||||| ||| | ||||| | Sbjct 40908 CACGGCAA-GGAGGAGATCAGAGCCAGAGATTTATTCTACGCTTTGTGGATTCCCGACCT 40850 Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 |||||| | || |||||| | | | |||| ||| | ||| | || Sbjct 40849 TTTTATGGAAAAAGTCGAAAAGA--ATGAGGACTGGTGCCTCTTCAACCCCTTGCA-TGC 40793 Query 123480 CCC-GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 | || |||| || ||||||||| | || || || | || || | |||||| Sbjct 40792 CAAAGGTTTGAATGATGTTTACGGCGAACAATTCAACCTCCTTTATGCTGAGTACGAGAA 40733 Query 123539 CGAAGGCAAAC-AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597 ||||| || | ||||| || |||| || | | || | || |||| | || Sbjct 40732 -GAAGGGAATGTATGTTAGAAAGATTCCTGCTCAACAATTATGGAATGCTATTGTAGACG 40674 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 | ||| | || || || || |||| |||| | || |||||| | |||||||||||| | | Sbjct 40673 CTCAAATTGAGACAGGGACTCCGTTCATGTTGTATAAAGACTCTTGCAACAGGAAATCTA 40614 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA-- 123715 | || ||||||||||| |||||| ||||| |||| | |||| |||||| | || || Sbjct 40613 ACCAAAGCAACTTGGGTACAATACAATGTTCTAATTTGTGCTGTGAAATTGTGGAGTACT 40554 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | | | || ||| | || |||||||||||||| || || Sbjct 40553 CTTCAAGG--GACCAAATCGCAGTGTGTAATTTGGCCTCCAT 40514 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || |||| || || ||||| ||||| || || || | ||| || Sbjct 542914 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCG 542973 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 542974 TCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 543033 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | ||||||||| ||||||||||| | |||| Sbjct 543034 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATA 543093 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||| ||||| Sbjct 543094 GTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 543128 >seq4 Length=588436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||||||||| || || || | ||| || ||| |||||||| Sbjct 178551 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 178492 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || ||||| || ||||| || || || || ||||| || Sbjct 178491 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 178432 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||||||| || || | || | || || ||||| Sbjct 178431 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 178373 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||||||||| Sbjct 178372 AAGGGTCTTTACGAAAATTTGCAT 178349 >seq112 Length=155 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| || ||| |||||||| Sbjct 33 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAATTGC 92 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 93 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002482444920