Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08]
127 sequences; 9,351,979 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq13 190 4e-43
seq16 174 3e-38
seq17 167 5e-36
seq4 147 4e-30
seq112 118 2e-21
>seq13
Length=1082976
Score = 190 bits (210), Expect = 4e-43
Identities = 186/240 (78%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| |||||||| | |||||| | ||||| |||||| || ||||| || || || ||||
Sbjct 542900 TACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAG 542959
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||||||||||||| ||||| || |||||||| || | | |||||| || ||||
Sbjct 542960 ACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAG 543019
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| ||||||||||| | || ||||| || || || || | || |
Sbjct 543020 GAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGA 543079
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821
||||||| || || ||||| || || || ||||| || || ||||||||| || | ||||
Sbjct 543080 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 543139
>seq16
Length=97376
Score = 174 bits (192), Expect = 3e-38
Identities = 180/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || || | ||||| ||||| || || ||||| || || || || |||||||
Sbjct 97297 TACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAG 97238
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||||||||||||| ||||| || |||||||| |||| | ||| || || ||||
Sbjct 97237 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAG 97178
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||||||||||||||| | ||| ||||| ||||| || || | || |
Sbjct 97177 GAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCA 97118
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817
| || | ||| || ||||| ||||| | || || ||||| ||||||||| || ||
Sbjct 97117 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTTTTTA 97062
>seq17
Length=213856
Score = 167 bits (184), Expect = 5e-36
Identities = 169/220 (77%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| || | ||||| ||||| || || ||||| ||||| || || || ||||
Sbjct 222 TACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 163
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||||||| ||||| ||||| || ||||||||||| || | ||| ||||| ||||
Sbjct 162 AAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAG 103
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| ||||||||||| | ||||| || ||||| || || | || |
Sbjct 102 GAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCA 43
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
|||| | ||| || ||||| || || || ||||| |||||
Sbjct 42 CTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACAAA 3
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| ||||| ||||| ||||| || || ||||| |||||||| ||| |||||||||||||
Sbjct 430 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCC 371
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || ||||| ||||| | | ||| || || ||||| || |||||||| ||||||
Sbjct 370 AGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 311
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| | ||| || || ||||| ||||| | ||||| || | ||| || |||||
Sbjct 310 ATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTA 251
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | ||||| || || ||||||||
Sbjct 250 CCAGTTAGAGTCTTGACGAAAATCTGCAT 222
>seq4
Length=588436
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| |||||||| | || || ||||||| |||||| || || || || || || |||||
Sbjct 178576 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 178517
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| | ||||||| || || | ||| || ||||||||||| || | ||||| || |||||
Sbjct 178516 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 178457
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||||| ||||| || |||||||| | || || || ||||| || || || || ||
Sbjct 178456 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 178397
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || ||||| || || | |||||||| || || ||||||
Sbjct 178396 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATT 178348
>seq112
Length=155
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||||| | | ||| ||||| ||||||||||| || || || || || ||||
Sbjct 7 TACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 66
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||||||| ||||| | ||| || ||||| ||||| | | ||| || || ||||
Sbjct 67 AAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 126
Query 82702 GTATTCCTTCCTTATCTTGAATCTT 82726
| || |||||||| |||||||||||
Sbjct 127 GAATACCTTCCTTGTCTTGAATCTT 151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981825602383053
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |