Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08]
127 sequences; 9,351,979 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq13 107 5e-18
seq112 98.7 2e-15
seq17 93.3 1e-13
seq26 84.2 5e-11
seq16 84.2 5e-11
>seq13
Length=1082976
Score = 107 bits (118), Expect = 5e-18
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 206158 AAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAA 206217
||| | |||||| ||||| || ||| || | || || || || || || ||||||
Sbjct 543137 AAGACAAAAATG---CAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAA 543081
Query 206218 GTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277
|| || || ||||| |||| || ||| ||||||||||| || |||||||||
Sbjct 543080 GTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATT 543021
Query 206278 TTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTG 206337
|| ||| ||| | | || || || || ||||| ||||||| || || ||| ||
Sbjct 543020 CCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTG 542961
Query 206338 GCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385
| || |||||| ||||||| ||||||||| | ||||| ||| |||||
Sbjct 542960 TCTGACTACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGA 542913
>seq112
Length=155
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| || ||||| ||| || ||| ||| | | |||||||| || |||
Sbjct 151 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAG 92
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| || ||| | | || |||||| |||| || || |||||||| |||
Sbjct 91 CAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCAC 32
Query 206374 CTTGTTTTGAGACT 206387
| ||||| |||||
Sbjct 31 TTGGTTTTAAGACT 18
>seq17
Length=213856
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| ||| || | || || || || |||||| | |||||||| || ||||| |
Sbjct 2 TTTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGACACTAT 61
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| |||||| ||||||||||| || ||||| ||| || || ||| | ||
Sbjct 62 TGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAACGTCT 121
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||||| || || ||||| |||||||||| || ||| | | || |||||| |||||||
Sbjct 122 GATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAGAA 181
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385
|| || || || ||| | ||| | |||
Sbjct 182 GGAATCCACCCTCCACTTGGTTCTAAGA 209
>seq26
Length=271150
Score = 84.2 bits (92), Expect = 5e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166
|| ||||| || | ||||| || ||||| || | ||| ||| | | ||| || |
Sbjct 88872 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 88931
Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226
||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || ||
Sbjct 88932 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 88991
Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286
| || || || || | || || | ||| |||| || |||||||| | ||| | ||
Sbjct 88992 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 89051
Query 173287 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 173330
|| |||||| ||| || || || || || |||||||| || ||
Sbjct 89052 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 89095
>seq16
Length=97376
Score = 84.2 bits (92), Expect = 5e-11
Identities = 152/222 (68%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| ||| ||||| || ||||| || || |||||| | || |||||
Sbjct 97066 AAAATG---CAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAG 97122
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
|| ||||| | || || || ||||||||||| || ||||| ||| ||
Sbjct 97123 TCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCT 97182
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| ||| | | || || || || ||||| ||||||| || || ||| | | |||
Sbjct 97183 GACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGAT 97242
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385
|||||| |||| || || || || || ||| | ||| | |||
Sbjct 97243 TACAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGA 97284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181818876955967
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |