Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08] 127 sequences; 9,351,979 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26 125 8e-24 seq22 84.2 2e-11 >seq26 Length=271150 Score = 125 bits (138), Expect = 8e-24 Identities = 309/465 (66%), Gaps = 8/465 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || || |||| ||||| || ||||| || || || ||| | || || ||||| || Sbjct 89540 TGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAA 89481 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| |||||| || ||||| || ||| | || || ||| ||||||||| Sbjct 89480 CGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTC 89421 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || ||||| ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 89420 AATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGG 89361 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| | ||| || | ||||| | || | || || || ||||| Sbjct 89360 AATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGG 89301 Query 53482 --CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 | ||| |||| || | || ||| | | |||||||||||||| || || || || Sbjct 89300 TACTTCG--AATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTT 89243 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||| |||||| || || || | || || | ||| | ||||| ||||| ||| Sbjct 89242 GACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCC 89183 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 ||||| | | || | || | ||| ||| || ||| | || ||||| | ||| Sbjct 89182 GACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCT--A 89125 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 | ||| | || | ||| ||||||| || || || |||||| ||| Sbjct 89124 GAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAA 89080 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| ||| || ||||||||| | || |||| | | ||||| ||| ||| ||| | Sbjct 88056 TTTACAAGACTGTTTGGGAGATTTCTCAAAAGACTATTATTGATATGGCTGCCGATAGAT 87997 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 || || ||||| || || ||||| ||||||| | || | ||| | ||| | Sbjct 87996 CAGCCTATATCGATCAATCTCAGTCGTTGAACATTCACCTGATGGCTCCAACTATGGGTA 87937 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 | |||| | ||||||||||| || |||||||| ||| | ||||| ||||||||||| | Sbjct 87936 AATTGACCAGTATGCACTTTTATGGTTGGAAGAAAGGATTAAAGACTGGTATGTACTACC 87877 Query 55917 TGCGGAC 55923 |||| || Sbjct 87876 TGCGTAC 87870 >seq22 Length=310694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || ||||||| || | ||||| || || | | || ||||| || || | |||| Sbjct 204326 CCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATGAGACCTCTCTTC 204267 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | || || || |||||||| || || ||| || ||| Sbjct 204266 TTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTCAACAGCAGCGAAG 204207 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | |||| |||||| ||||||| || ||||| || ||||| ||| Sbjct 204206 GCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCTCATGGCCCAGTCA 204147 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || ||| ||||| || | || ||||| || | ||| ||| | | ||||| Sbjct 204146 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAATTCAGACTCTTTT 204087 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||| |||| | | ||||||| | ||||| ||||| || ||||| Sbjct 204086 GGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTGAAT 204037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215131294600