Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08]
127 sequences; 9,351,979 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq17 174 4e-38
seq16 161 2e-34
seq4 152 1e-31
seq13 147 5e-30
seq112 120 7e-22
>seq17
Length=213856
Score = 174 bits (192), Expect = 4e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||||| || | |||||||||||| || ||||| || || ||||| | ||| || ||
Sbjct 440 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 381
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|| |||||||| ||||| || |||||||| | ||||| ||||||||||||| |||||
Sbjct 380 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 321
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
|||||| || ||||| ||| ||||| || || || || || || ||||| |||||
Sbjct 320 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 261
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || |||||||| || || | ||||||
Sbjct 260 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 222
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
|||||| || | ||| || ||||| || || |||||||| || || | ||| || || ||
Sbjct 209 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 150
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||||||||| ||||| || || ||||| || ||||| || |||||||||| ||||||||
Sbjct 149 ATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTT 90
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| || ||||| || ||||| || || ||||| || || || || ||||||||
Sbjct 89 GTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGAT 30
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105
||||| || || | |||||| |||||
Sbjct 29 AGTCTTACCAGTTAAAGTCTTGACAAA 3
Score = 86.0 bits (94), Expect = 1e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
|||||||||||||| || ||||| || |||||||| |||||||||| | || || ||
Sbjct 61791 CTTCCAAAGAAGCATGGTAGAGGTGGTCAATCTGCCCTGCGTTTTGCCCGTCTGAGAGAG 61732
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTT 139896
|| || || ||||||||| | |||||||||
Sbjct 61731 GAGAAAAGACACAACTACGTTAGAAAAGTT 61702
>seq16
Length=97376
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
|||||| || | ||| || ||||| || ||||||||||| ||||| | ||| || || ||
Sbjct 97284 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 97225
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||||| || || || || | ||||| ||||||||||||| ||||||||
Sbjct 97224 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 97165
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|| || ||||| ||| || || || || ||||| || || ||||| ||||||||
Sbjct 97164 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 97105
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || || || ||||| | |||||||||
Sbjct 97104 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 97066
>seq4
Length=588436
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| ||||| | ||| | ||| ||||| ||||||||||| || || | | || || ||
Sbjct 178564 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 178505
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||| |||| ||||| || || ||||| || || |||||||||||||||| ||| |||||
Sbjct 178504 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 178445
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|||||| ||||| || ||||| || || ||||| || || ||||| | |||||
Sbjct 178444 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 178385
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || |||||||| || | ||||||||
Sbjct 178384 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 178346
>seq13
Length=1082976
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| || || ||||| | ||| ||||| || |||||||| || || | || || || ||
Sbjct 542913 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 542972
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||||| || || || || | ||||||||||||||||||| |||||||||
Sbjct 542973 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 543032
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| || ||||| || || || ||||||||||| ||| || || || | || ||
Sbjct 543033 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 543092
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || | ||||| || || | |||||||||
Sbjct 543093 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543131
>seq112
Length=155
Score = 120 bits (132), Expect = 7e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
||||||| || | ||| ||||| || || ||||||||||| || || | ||| || ||
Sbjct 18 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 77
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||||| ||||| || |||||||| | ||||| ||||||||||||| ||||||
Sbjct 78 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 137
Query 211017 TTGTCCTGGATCTT 211030
||||| || |||||
Sbjct 138 TTGTCTTGAATCTT 151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150113842355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |