Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016505.1_202016-02-08] 127 sequences; 9,351,979 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13 152 1e-31 seq17 147 5e-30 seq16 143 6e-29 seq112 125 2e-23 seq60 93.3 1e-13 seq4 87.8 4e-12 >seq13 Length=1082976 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || ||||| | ||| || || || |||| ||||| || | || |||||| || Sbjct 542913 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 542972 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| ||||| || || | ||||||||||| || ||||| |||||||| Sbjct 542973 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 543032 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| ||| ||||||||||| |||| || || || || || || Sbjct 543033 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 543092 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | ||| | |||||||| Sbjct 543093 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543131 >seq17 Length=213856 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||| |||||||| || |||| ||||| || | | |||||| || Sbjct 209 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 150 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| ||||| ||||| || ||||| || || || |||||||||||||| Sbjct 149 ATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTT 90 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| || || || |||||||| | ||||| || | ||||| Sbjct 89 GTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGAT 30 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || ||||| || Sbjct 29 AGTCTTACCAGTTAAAGTCTT 9 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| | || | ||| ||||||||||| ||||| | ||||||||| | | |||||| Sbjct 440 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 381 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || ||||| ||||||||||| | ||||| ||||| || ||||||||||| Sbjct 380 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 321 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||| ||||| || || || || || ||||| | || || || | || Sbjct 320 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 261 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || || | ||| || | ||| | ||||| Sbjct 260 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 222 >seq16 Length=97376 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||| |||||||| ||||||| |||||||| | | |||||| || Sbjct 97284 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 97225 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| ||||| || || | ||||| ||||| || |||||||||||||| Sbjct 97224 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 97165 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| ||||| || ||| || || |||||||| | ||||| || | ||||| Sbjct 97164 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 97105 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | ||||| | || | |||||||| Sbjct 97104 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 97066 >seq112 Length=155 Score = 125 bits (138), Expect = 2e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | || | ||||||||| ||||| ||||||| ||||| || | | |||||| Sbjct 18 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 77 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | ||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 78 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 137 Query 225616 TTGTCTTGGATCTT 225629 |||||||| ||||| Sbjct 138 TTGTCTTGAATCTT 151 >seq60 Length=4500 Score = 93.3 bits (102), Expect = 1e-13 Identities = 192/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502 ||||| || ||||||| || | ||| ||||| ||| | ||| | ||| | || | Sbjct 4310 TTATACTTTATATTTGCATTATTCTGTGG-ATTATTAGGATCAATAATGTCTTTAATATT 4252 Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 ||| ||||||||| | ||||| ||| |||||||| | ||||| ||| | | ||| Sbjct 4251 AAGATTAGAATTATCAGCTCCTGGTAACCAAATATTAATGGGTAACCATCAATTATTCAA 4192 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || | || || ||||| | | ||| | |||||||| || ||||| | | || Sbjct 4191 TGTAGTAGCAACAGCACATGCTGTATTAATGGTATTCTTTTTAGTAATGCCAGCTGCAAT 4132 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 ||| ||| || |||| | | ||||||||||| ||||| ||||||| | ||| | Sbjct 4131 AGGATTTTTTGGTAATTATCTATTACCTTTAATGATAGGTGCAAGTGATATGTCATTTGC 4072 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || | || ||||| ||||||||| |||| ||| | ||| Sbjct 4071 TAGATTAAATAATATTTCATTTTGATTATTACCACCTGCTTTA 4029 >seq4 Length=588436 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || || || || ||||||||||| |||||||| Sbjct 460525 GAAAATTTGACCATCAGTAATAGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 460466 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||| || || | || || || || || | || |||||||| || || Sbjct 460465 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 460415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529259528138