Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 122 8e-23 seq8 98.7 9e-16 seq24 95.1 1e-14 seq101 87.8 2e-12 >seq4 Length=598407 Score = 122 bits (134), Expect = 8e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| | || |||||||||||||||||||| || || || || || |||||| | || || Sbjct 79028 GAAGCCAAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTG 79087 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | ||||||| | | || | ||||| | || ||||||||| || | || Sbjct 79088 GAGTCTTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCT 79147 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || ||||| |||||||| || || ||||| || || ||||| || || ||| || Sbjct 79148 CCTGACCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCT 79207 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| ||||| || || ||| | || |||| |||||| |||| || ||| Sbjct 79208 GACTACAACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 79264 >seq8 Length=658281 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| |||||||| ||||| | || || || || || ||| | || || || Sbjct 85888 CAAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGT 85947 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||||| | || || | Sbjct 85948 CCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTG 86007 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || ||| | || || ||||| || || |||||||| || ||| || || | Sbjct 86008 ACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACT 86067 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || ||| | || ||||| || ||| |||| || |||| Sbjct 86068 ACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTA 86121 >seq24 Length=213590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || |||||||| ||| | || |||||||| || || ||||| Sbjct 213563 GACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAGCAACTGGAA 213504 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||| | ||||| || |||||||| ||||| |||||||| ||||| | Sbjct 213503 GACGGTAGAACTCTTTCTGATTACAATATTCAAAAGGAATCCACTCTTCACTTGGTATTA 213444 Query 31406 AGACTGAGGGGCGGT 31420 ||||| || || ||| Sbjct 213443 AGACTTAGAGGTGGT 213429 >seq101 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || |||||||| ||| | || |||||||| || || |||||| Sbjct 201 GACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAGCAATTGGAA 142 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||| | || || ||||| ||||| ||||| ||||| || |||| | Sbjct 141 GATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTTTTA 82 Query 31406 AGACTGAGGGGCGGTA 31421 |||||||| || |||| Sbjct 81 AGACTGAGAGGTGGTA 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765536327600