Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26 194 4e-44 seq8 168 2e-36 seq40 163 7e-35 seq4 156 1e-32 seq24 109 1e-18 seq101 96.9 8e-15 seq1 89.7 1e-12 >seq26 Length=310633 Score = 194 bits (214), Expect = 4e-44 Identities = 394/578 (68%), Gaps = 8/578 (1%) Strand=Plus/Plus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| ||| |||||||| ||||||| ||||| |||||||||| || ||| |||| Sbjct 203788 GATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGAAATAGAC 203847 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 ||| | | || || || ||||| ||| | ||| | || |||| | || || Sbjct 203848 CTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATTCTTCATC 203907 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || | ||||| || ||||| | ||| ||||| || || ||||| | || || Sbjct 203908 TCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAA 203967 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 || ||| || ||||| || |||| ||||| | ||| |||||||| |||||||| Sbjct 203968 AATTTCAGTGCTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATG 204027 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC 269026 || || || ||||| || |||| ||| | | || |||||||| || | ||| Sbjct 204028 ATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCA 204087 Query 269027 AACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 || || || || || | | || |||| | | | ||| | | | |||| | Sbjct 204088 AAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCA-TGTATCAAAGAAAAGGC 204146 Query 269086 TGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGC 269142 ||| ||||| ||| |||||| ||| || || || || ||| | || ||||| Sbjct 204147 TGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGC 204206 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 || || ||||| || ||||| |||||||| || |||||||| ||||||| |||||||| Sbjct 204207 CTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAA 204266 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||| ||||| || |||||||| || || ||||| || || | || |||| ||||| || Sbjct 204267 GAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 204326 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATT 269300 |||||| ||||| ||||| || ||||| || ||| Sbjct 204327 ATTACACACTGACTTTGCTTGCTTGCTATTTTCTCATT 204364 >seq8 Length=658281 Score = 168 bits (186), Expect = 2e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || || || || ||||| || ||||| || || |||||| Sbjct 86122 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCA 86063 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||| | | ||||| |||||| Sbjct 86062 GACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 86003 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || |||||||| | || ||||| || | ||| ||| | || Sbjct 86002 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCG 85943 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||||| || | || || || || ||||||||||| Sbjct 85942 ACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85890 >seq40 Length=97367 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || |||| || || || | || | || ||||| || || || || || ||| Sbjct 65 ATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCA 124 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||||| | || || |||||| Sbjct 125 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGA 184 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| | ||| ||||| || | || || | || Sbjct 185 GGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCC 244 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 245 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 297 >seq4 Length=598407 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || | || || ||||| || || || || || |||||||| Sbjct 79263 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 79204 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| || || | ||| || |||||||| || || | |||||| |||||||| Sbjct 79203 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 79144 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| | || || || || | || ||| || || ||| Sbjct 79143 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 79084 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 79083 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 79033 >seq24 Length=213590 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||| | || | || ||||| || |||||||| || ||||| Sbjct 213430 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213489 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||||||||| ||||| || ||||| || || | | || || |||||||| Sbjct 213490 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 213549 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||| || || |||||||| | ||| || || || Sbjct 213550 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATC 213587 >seq101 Length=228 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | |||||||| || || || || |||||| Sbjct 65 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 124 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| ||||| | ||| || ||||| || || | | || || |||||| Sbjct 125 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 184 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || || ||||| || || |||||||| | ||||| || || Sbjct 185 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTC 225 >seq1 Length=591226 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 ||||||||||||||| |||||||| | | |||||||||||||| |||||||| Sbjct 219267 GATAAGGATGAATGGTTAACTTGGAAGGCCAGAACTGATCCTGTTTTACACATAGAGCTG 219326 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||||||||||||||||| | || | ||||| || || |||| | || || || || Sbjct 219327 AGAAGATGGGCAGATATTCTAGTGGTTGCACCTTTGACCTCAAATACATTTGCCAAAATC 219386 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAAC 165246 ||| || | ||| | || ||||| || Sbjct 219387 GCTCTAGGGCTGTGTGACAATTTGTTGAC 219415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396113394740