Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 161 2e-34 seq24 159 8e-34 seq101 141 2e-28 seq31 100 6e-16 >seq8 Length=658281 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| ||| ||||| | ||| ||||| || || || ||||| || | ||||| Sbjct 86114 TCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 86055 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || |||||||| || || || | ||||||||||| |||||||| || Sbjct 86054 TCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCC 85995 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| || |||||| || || |||||||| || || ||||| | Sbjct 85994 TTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAA 85935 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 ||||| ||||| || || || || || ||||| | ||||||| || Sbjct 85934 GGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTG 85888 >seq24 Length=213590 Score = 159 bits (176), Expect = 8e-34 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| || || | |||||||||||| || ||||||||||||||||| | |||||| Sbjct 213435 TCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGT 213494 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || |||||||| |||||||| | ||||| ||||| |||||||| || Sbjct 213495 TCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACC 213554 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| ||||||||||| || |||||||| ||||| Sbjct 213555 TTCCTTGTCTTGAATCTTAGATTTGACGTTATCAAT 213590 >seq101 Length=228 Score = 141 bits (156), Expect = 2e-28 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| ||||| | ||| ||||| || || ||||| || ||||| || | |||||| Sbjct 73 TCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 132 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||||| |||||||| | ||||| ||||| |||||||| || Sbjct 133 TCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACC 192 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| ||||||||||| || ||| ||||| ||||| Sbjct 193 TTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAAT 228 >seq31 Length=271179 Score = 100 bits (110), Expect = 6e-16 Identities = 203/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 160570 GATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGT 160629 ||| ||||| ||||| | ||| ||| | |||| | ||||| |||||||| ||||| Sbjct 182017 GATCAGAGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGT 182076 Query 160630 GAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGT 160689 || | ||||| ||||||| ||| |||| ||| | |||||| ||||| |||| || || Sbjct 182077 AGAACAGAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGT 182136 Query 160690 TTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAA 160749 ||||| || || ||| | || |||||||||||||| || || | | | | | Sbjct 182137 CTATGGAGATGAATTTGAGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACA 182196 Query 160750 GGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTAT 160809 | | || |||||| | || ||| | |||||||| || ||| || |||| Sbjct 182197 AACCATCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTAC 182256 Query 160810 GCCCTTTATCGCATACAAGGATGCCATCTGTCGC---AAGAGTAACCAGAAGAACTTTGG 160866 || || || || |||||||| ||| | || | ||||||||||||||| || Sbjct 182257 TCCATTCATGCTGTATAAGGATGC---TTGTAACAAAAAAACTAACCAGAAGAACTTGGG 182313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479396638885