Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08]
155 sequences; 9,360,711 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq40 131 3e-25
seq8 113 9e-20
seq4 96.9 7e-15
seq24 93.3 8e-14
seq101 91.5 3e-13
>seq40
Length=97367
Score = 131 bits (144), Expect = 3e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| |
Sbjct 112 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 171
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|| || ||||| || || ||||| |||||||| || || ||| |||||| ||||
Sbjct 172 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 231
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || || || || ||||| || || ||||| |||| ||||||| ||| |||||
Sbjct 232 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 291
Query 192534 CATTTTATTA 192543
|||||| |||
Sbjct 292 CATTTTTTTA 301
>seq8
Length=658281
Score = 113 bits (124), Expect = 9e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | | | || | || ||||||| ||| || ||| || ||
Sbjct 86126 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 86067
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| | |||| | || |||| ||| ||||||||||| || || | ||||| ||
Sbjct 86066 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 86007
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||| || |||||||| || ||||| || || || ||||| || | || || ||
Sbjct 86006 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 85947
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | ||||| || ||||| ||||| || || | || |||||||||||
Sbjct 85946 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85890
>seq4
Length=598407
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | | || || || ||||||| ||| || ||| || || |||||
Sbjct 79264 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 79205
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| |||| |||| |||||||| |||||||||||||| | | |||||| ||||| ||
Sbjct 79204 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 79145
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || || || || || || || || |||| || || || || ||
Sbjct 79144 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 79085
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | || || || ||||| || | || || | || || ||||||||
Sbjct 79084 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 79034
>seq24
Length=213590
Score = 93.3 bits (102), Expect = 8e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||||||||| | |||||| || || | ||| | | |||| || ||||| |||||||
Sbjct 213429 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 213487
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | |||| | || |||| ||| |||||||| ||||| || | || || ||||| |
Sbjct 213488 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 213547
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465
| || ||||| || ||||| || ||| ||| || |||
Sbjct 213548 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTA 213585
>seq101
Length=228
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 65 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 124
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 125 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 184
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
|| || ||||| || ||||| || ||| ||||| ||
Sbjct 185 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984478044884250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |