Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8 190 4e-43 seq40 174 3e-38 seq4 147 4e-30 seq24 132 9e-26 seq101 127 4e-24 >seq8 Length=658281 Score = 190 bits (210), Expect = 4e-43 Identities = 186/240 (78%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | |||||| | ||||| |||||| || ||||| || || || |||| Sbjct 86121 TACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAG 86062 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||||||||| ||||| || |||||||| || | | |||||| || |||| Sbjct 86061 ACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAG 86002 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||| | || ||||| || || || || | || | Sbjct 86001 GAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGA 85942 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 ||||||| || || ||||| || || || ||||| || || ||||||||| || | |||| Sbjct 85941 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 85882 >seq40 Length=97367 Score = 174 bits (192), Expect = 3e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || || | ||||| ||||| || || ||||| || || || || ||||||| Sbjct 66 TACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAG 125 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||||||||| ||||| || |||||||| |||| | ||| || || |||| Sbjct 126 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAG 185 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||| | ||| ||||| ||||| || || | || | Sbjct 186 GAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCA 245 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 | || | ||| || ||||| ||||| | || || ||||| ||||||||| || || Sbjct 246 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTTTTTA 301 >seq4 Length=598407 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||||| |||||| || || || || || || ||||| Sbjct 79264 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 79205 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| || || | ||| || ||||||||||| || | ||||| || ||||| Sbjct 79204 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 79145 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| ||||| || |||||||| | || || || ||||| || || || || || Sbjct 79144 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 79085 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| || || | |||||||| || || |||||| Sbjct 79084 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATT 79036 >seq24 Length=213590 Score = 132 bits (146), Expect = 9e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| ||||| ||||| || || ||||| |||||||| ||| ||||||||||||| Sbjct 213448 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCC 213507 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||| ||||| | | ||| || || ||||| || |||||||| |||||| Sbjct 213508 AGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 213567 Query 82722 ATCTTTGCTTTTACATTTTCAAT 82744 ||||| | ||| || || ||||| Sbjct 213568 ATCTTAGATTTGACGTTATCAAT 213590 >seq101 Length=228 Score = 127 bits (140), Expect = 4e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| | | ||| ||||| ||||||||||| || || || || || |||| Sbjct 66 TACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 125 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||| ||||| | ||| || ||||| ||||| | | ||| || || |||| Sbjct 126 AAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 185 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | || |||||||| ||||||||||| | ||||| || ||||| Sbjct 186 GAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAAT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825250152545