Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08]
155 sequences; 9,360,711 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq40 136 4e-27
seq8 131 2e-25
seq4 105 7e-18
seq24 89.7 5e-13
>seq40
Length=97367
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || |||||||||||||| |||||||| || || || | ||| || || ||
Sbjct 91 GTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTG 150
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || |||||||| ||||| ||||| || || || || ||||| || |||||||| ||
Sbjct 151 CTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTT 210
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|||||| || | ||||| || || ||||| || ||||| || || ||||| ||
Sbjct 211 GGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGT 270
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTT 134719
|| |||||||| ||||| |||||||| ||
Sbjct 271 TAGGGTTTTAACAAAAATCTGCATTTTTTT 300
>seq8
Length=658281
Score = 131 bits (144), Expect = 2e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || || || ||||| | || || ||||| || ||||||||||| | |
Sbjct 86119 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 86060
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| | | | | ||| || || || || || |||||||||||||| || || || || ||
Sbjct 86059 AGAGTTCT-ACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 86001
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || |||||||| || ||||| ||| | |||||||| || || ||
Sbjct 86000 AATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 85941
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| | ||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 85940 TTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85890
>seq4
Length=598407
Score = 105 bits (116), Expect = 7e-18
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575
|| || |||||||| ||||||||||| | ||| | | | | || || | || || ||
Sbjct 79233 GTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCA-TCCTCCAATTGCTTACC 79175
Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635
||||| |||| |||||| || || || || || || || || || ||||| || ||
Sbjct 79174 AGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTT 79115
Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695
||| ||| | |||||||| || ||||| || | || || || |||||||| | ||
Sbjct 79114 GACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGT 79055
Query 134696 TTTAACGAAAATTTGCATTTTG 134717
|| ||||||||||||||||||
Sbjct 79054 CTTTACGAAAATTTGCATTTTG 79033
>seq24
Length=213590
Score = 89.7 bits (98), Expect = 5e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| |||| || || | ||| || ||||||||||||||||| ||||| || |
Sbjct 213430 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213489
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || || || || || || || |||||||| ||||| || || ||
Sbjct 213490 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 213549
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638
|| ||||| || |||||||| || ||||||
Sbjct 213550 ATACCTTCCTTGTCTTGAATCTTAGATTTGAC 213581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397420790600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |