Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 161 1e-34 seq40 156 5e-33 seq8 140 4e-28 seq24 114 1e-20 seq101 109 6e-19 >seq4 Length=598407 Score = 161 bits (178), Expect = 1e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| |||||||| |||||||| || | ||||| ||||| Sbjct 79036 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 79095 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 79096 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 79155 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || ||||||||||||||| | ||||||| | | || | | ||||| || Sbjct 79156 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 79215 Query 27585 TGTCCAAAAGGAATCCACT 27603 |||||||||| || ||| Sbjct 79216 CATCCAAAAGGAGTCTACT 79234 >seq40 Length=97367 Score = 156 bits (172), Expect = 5e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || |||||||| ||||||||||| |||||| Sbjct 295 AATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 236 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || | || ||||| || ||||| || |||||||| ||||| Sbjct 235 AGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGACCA 176 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| |||||||||||||||||||||| || || | | | || || | || || || Sbjct 175 GCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAA 116 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||||||||| || || Sbjct 115 CATCCAAAAGGAATCCACCCTCCA 92 >seq8 Length=658281 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | ||||| ||||||||||| | || || ||||| Sbjct 85892 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCCTC 85951 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 85952 CGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 86011 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||||||||| || || | | | || || | ||||| || Sbjct 86012 ACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTACAA 86071 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| || ||| | || || || Sbjct 86072 CATCCAGAAGGAGTCTACTTTGCACCTGGT 86101 >seq24 Length=213590 Score = 114 bits (126), Expect = 1e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||| ||||| |||||||| || |||||||| |||||||| ||| | || || ||||||| Sbjct 213574 CTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTA 213515 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 ||||||| || || | | | || || | || || ||| | ||||||||||||||||||| Sbjct 213514 AGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAATATTCAAAAGGAATCCACTCTTC 213455 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640 | | || || | ||| | ||||| || ||| Sbjct 213454 ACTTGGTATTAAGACTTAGAGGTGGTGAACTTT 213422 >seq101 Length=228 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| |||| ||||| |||||||| || |||||||| |||||||| ||| | || || ||| Sbjct 216 AAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCT 157 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 ||||||||| | || |||| | | || || | ||||| || ||||||||||||| ||| Sbjct 156 GGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACT 97 Query 27604 CTTCA 27608 || || Sbjct 96 CTCCA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309295023600