Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08] 155 sequences; 9,360,711 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq40 141 6e-29 seq8 109 4e-19 >seq40 Length=97367 Score = 141 bits (156), Expect = 6e-29 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| ||||||||||| || || || || |||||||| || || || || Sbjct 297 AAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 238 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || | || || || |||||| | || || || Sbjct 237 TCAGACACTATTGATAATGTCAAATCCAAGA-TTCAAGATAAGGAAGGTATTCCTCCTGA 179 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || |||||||| ||||| || || ||||||||||||| | ||| | ||||| Sbjct 178 CCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 119 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| ||||| || ||||| | || || ||| |||| || Sbjct 118 CAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGATT 77 >seq8 Length=658281 Score = 109 bits (120), Expect = 4e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||| | || || || || || || | ||||| || ||| Sbjct 85890 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCC 85949 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | || ||||| ||||| | || || || Sbjct 85950 TCCGACACCATCGACAATGTCAAGTCCAAGA-TTCAAGACAAGGAAGGAATTCCTCCTGA 86008 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||||| || ||||| || || ||||||||||||| | ||| | || || Sbjct 86009 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 86068 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 |||||| || || ||||| || || || | ||| | || ||| |||| || |||| Sbjct 86069 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTATCA 86124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008961478740