Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016515.1_202016-02-08]
155 sequences; 9,360,711 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq40 149 2e-30
seq4 129 1e-24
seq8 125 2e-23
seq101 114 3e-20
seq24 114 3e-20
>seq40
Length=97367
Score = 149 bits (164), Expect = 2e-30
Identities = 165/219 (75%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|||||| | || ||||| || ||||| || ||||| || || ||||| || |||||||
Sbjct 302 TTAAAAAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGG 243
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
| |||||||| || || || |||||| |||||||| || || ||||| || ||||
Sbjct 242 AGTCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTC 183
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| ||||||||||| | || || || || || || || ||||| || || |||||| | |
Sbjct 182 CTGACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTG 123
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
|||| ||| ||||||| ||||| || || || |||| ||
Sbjct 122 ATTACAACATCCAAAAGGAATCCACCCTCCA-CTTGGTT 85
>seq4
Length=598407
Score = 129 bits (142), Expect = 1e-24
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| || || || || || || || |||||| | ||||||||
Sbjct 79034 AAAATGC---AAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAG 79090
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| ||||| || || |||||||| |||||||||||||| || ||||| |||||
Sbjct 79091 TCTTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCT 79150
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
||||| || || || ||||| || || || || | || ||||| || ||| | | ||
Sbjct 79151 GACCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGAC 79210
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| ||||||| || || || |||| ||||
Sbjct 79211 TACAACATCCAAAAGGAGTCTACTTTGCA-CTTG 79243
>seq8
Length=658281
Score = 125 bits (138), Expect = 2e-23
Identities = 165/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | |||||||| || || | || || || || || ||| | || || ||
Sbjct 85890 AAAATGC---AGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAG 85946
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||||||||| || ||||| |||||||| ||||| |||||||| |||||
Sbjct 85947 TCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCT 86006
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
||||| ||||| | || || || || || || || ||||| || || ||||| | ||
Sbjct 86007 GACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGAC 86066
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||| |||| || || || || |||| || ||| ||||| | |||
Sbjct 86067 TACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGA 86114
>seq101
Length=228
Score = 114 bits (126), Expect = 3e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|| || ||||| || |||||||| ||||| ||||| || ||||| |||||||||||
Sbjct 228 ATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 169
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| |||||||| || || || | |||||||| || |||||| | || || ||| |||||
Sbjct 168 TTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAA 109
Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || || || | ||||| ||||| |||
Sbjct 108 AAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGA 73
>seq24
Length=213590
Score = 114 bits (126), Expect = 3e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|| || ||||||||| |||||||| ||||| ||||| || ||||| |||||||||||
Sbjct 213590 ATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 213531
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| |||||||| || || || || ||||| || || |||||| | ||||| || | |||
Sbjct 213530 TTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAATATTCAA 213471
Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || || || | || || ||||| |||
Sbjct 213470 AAGGAATCCACTCTTCACTTGGTATTAAGACTTAGA 213435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203728809465070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |