Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016525.1_202016-02-08] 195 sequences; 9,366,705 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 125 8e-24 seq16 84.2 2e-11 >seq36 Length=207405 Score = 125 bits (138), Expect = 8e-24 Identities = 309/465 (66%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || || |||| ||||| || ||||| || || || ||| | || || ||||| || Sbjct 70500 TGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAA 70559 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| |||||| || ||||| || ||| | || || ||| ||||||||| Sbjct 70560 CGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTC 70619 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || ||||| ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 70620 AATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGG 70679 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| | ||| || | ||||| | || | || || || ||||| Sbjct 70680 AATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGG 70739 Query 53482 --CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 | ||| |||| || | || ||| | | |||||||||||||| || || || || Sbjct 70740 TACTTCG--AATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTT 70797 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||| |||||| || || || | || || | ||| | ||||| ||||| ||| Sbjct 70798 GACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCC 70857 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 ||||| | | || | || | ||| ||| || ||| | || ||||| | ||| Sbjct 70858 GACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCT--A 70915 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 | ||| | || | ||| ||||||| || || || |||||| ||| Sbjct 70916 GAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAA 70960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| ||| || ||||||||| | || |||| | | ||||| ||| ||| ||| | Sbjct 71984 TTTACAAGACTGTTTGGGAGATTTCTCAAAAGACTATTATTGATATGGCTGCCGATAGAT 72043 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 || || ||||| || || ||||| ||||||| | || | ||| | ||| | Sbjct 72044 CAGCCTATATCGATCAATCTCAGTCGTTGAACATTCACCTGATGGCTCCAACTATGGGTA 72103 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 | |||| | ||||||||||| || |||||||| ||| | ||||| ||||||||||| | Sbjct 72104 AATTGACCAGTATGCACTTTTATGGTTGGAAGAAAGGATTAAAGACTGGTATGTACTACC 72163 Query 55917 TGCGGAC 55923 |||| || Sbjct 72164 TGCGTAC 72170 >seq16 Length=135707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || ||||||| || | ||||| || || | | || ||||| || || | |||| Sbjct 131275 CCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATGAGACCTCTCTTC 131216 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | || || || |||||||| || || ||| || ||| Sbjct 131215 TTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTCAACAGCAGCGAAG 131156 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | |||| |||||| ||||||| || ||||| || ||||| ||| Sbjct 131155 GCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCTCATGGCCCAGTCA 131096 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || ||| ||||| || | || ||||| || | ||| ||| | | ||||| Sbjct 131095 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAATTCAGACTCTTTT 131036 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||| |||| | | ||||||| | ||||| ||||| || ||||| Sbjct 131035 GGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTGAAT 130986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214666161000