Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq42 154 2e-32 seq5 93.3 4e-14 seq1 82.4 8e-11 >seq42 Length=135705 Score = 154 bits (170), Expect = 2e-32 Identities = 398/604 (66%), Gaps = 7/604 (1%) Strand=Plus/Minus Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659 || || || ||| | ||||| | | |||| || || |||| |||||||| ||||| Sbjct 5002 CGTCGTTTTGTGCTCTTCCCTTTGAAGTACCACGATATCTGGCAAATGTACAAGCAGGCC 4943 Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719 || || || || ||||| | ||||| | |||||| ||||| | |||||| | Sbjct 4942 GAAGCTTCCTTTTGGACTGCTGAGGAAATAGACCTGGGTAAGGATTTGCATGACTGGAAT 4883 Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776 || ||||||| || || |||||| | || || ||||| || || ||| Sbjct 4882 AATCGTATGAACGATAATGAAAAATTCTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCC 4823 Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836 ||||| || ||||| || || |||| || |||| | ||||| || | || Sbjct 4822 TCTGACGGTATTGTCAATGAAAACTTGGTGGAAAATTTCAGTGCTGAGGTTCAACTTCCC 4763 Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 || || ||||| ||||| || |||||| ||||||||| | ||||| || | || Sbjct 4762 GAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTAC 4703 Query 116897 TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACG 116954 || || || || || ||| | | | | ||| || || |||| || | Sbjct 4702 TCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGT--CTGAATTCCTGTTCAATG 4645 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||||||||| || || || ||||||| ||||| || ||||| || | ||||| | | Sbjct 4644 CCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCTG 4585 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 || || |||| || || |||| |||||||| || || ||||| |||||| Sbjct 4584 ATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCT 4525 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 |||| || ||| || | || || ||| | ||||| | || |||||||| || ||| Sbjct 4524 TTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGA 4465 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | ||| ||| ||||| || | ||| |||||||| | || |||||||| || |||| Sbjct 4464 CCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGCTTGCTTGC 4405 Query 117195 TGTT 117198 | || Sbjct 4404 TATT 4401 >seq5 Length=629313 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || | || || || || || ||| | || ||||| | Sbjct 463074 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 463133 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | ||||| || |||| ||||| || || || || | || Sbjct 463134 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 463193 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| | || | || || || || ||||| |||| | || || ||||| Sbjct 463194 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 463253 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||| || || || | ||||| || || Sbjct 463254 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 463304 >seq1 Length=598235 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| |||||||| || || || || || || |||||| | || || || | Sbjct 366521 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 366462 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| || |||| ||||| || |||| ||||| ||||| || || | || Sbjct 366461 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 366403 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| || || || || |||| || | | || | ||||| Sbjct 366402 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 366343 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| |||||| | || |||| Sbjct 366342 CAACATCCAAAAGGAGTCTACTTTGCA 366316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218156681120