Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08]
162 sequences; 9,346,869 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq42 242 4e-59
>seq42
Length=135705
Score = 242 bits (268), Expect = 4e-59
Identities = 569/853 (67%), Gaps = 7/853 (1%)
Strand=Plus/Plus
Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972
||||| || ||| |||||| ||||| |||||||| |||||||| ||| || || ||
Sbjct 4119 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 4178
Query 13973 TCCATAAAATCAAATGGATTTGTTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAG 14031
||||| || ||||||||| |||||||| | |||| || | || || ||| ||
Sbjct 4179 TCCATGAAGTCAAATGGA-TTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAG 4237
Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091
|| ||| || |||| |||||||| ||| || |||| || || ||||| || | ||
Sbjct 4238 TAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAA 4297
Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151
||||||| | || || | |||||| || |||||||| | |||||
Sbjct 4298 GGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAAT 4357
Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211
| || ||||| | | | || |||| ||| ||| | || || |||||
Sbjct 4358 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 4417
Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271
||| || | ||||| ||||| | |||||| || || || || || || ||||||||
Sbjct 4418 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 4477
Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331
| |||| || || ||||| || || | ||| || ||||| |||||||| || |||||
Sbjct 4478 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 4537
Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391
||| ||||| || || | || ||||| | ||| |||| | | | || |||||| |
Sbjct 4538 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 4597
Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451
| ||||| |||| |||| ||| ||| | || || || || ||||| || |
Sbjct 4598 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAA 4657
Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511
||| |||||| | | | ||||| |||||||| || ||| || | || |||||
Sbjct 4658 TTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTG 4717
Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571
||||| ||||| ||||| ||||| ||||| ||| | ||||| | ||| |||||
Sbjct 4718 AATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAACCTC 4777
Query 14572 TG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630
| | | |||| |||| |||| |||||||| || ||||| ||| || ||||| || |
Sbjct 4778 AGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAAGG 4836
Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA---GTTTTTTCCAATCGGCTA 14687
| | | | || ||| ||| || | || | | | | || ||||| || |
Sbjct 4837 CAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATGCA 4896
Query 14688 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACA 14747
|||||||| || |||| ||| ||| | |||||||| ||| | || | || ||||
Sbjct 4897 AATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTACA 4956
Query 14748 TTACCCATATTTC 14760
|| ||| || ||
Sbjct 4957 TTTGCCAGATATC 4969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482344623250160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |