Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38 311 1e-79 seq42 170 2e-37 >seq38 Length=207422 Score = 311 bits (344), Expect = 1e-79 Identities = 1211/1903 (64%), Gaps = 45/1903 (2%) Strand=Plus/Minus Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 ||||||| | ||| || ||||||| ||| | || | || ||||| || |||||||| | Sbjct 72206 CCTTGTCAACTGTAAACTGAATGGCAGCAGCGGCAGCTTGAGTACGCAGGTAGTACATAC 72147 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || |||| || |||| || ||||| |||||||| || | ||| | | | Sbjct 72146 CAGTCTTTAATCCTTTCTTCCAACCATAAAAGTGCATACTGGTCAATTTACCCATAGTTG 72087 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 || | | || || |||| || ||| ||||||||| ||||| || || |||| Sbjct 72086 GAGCCATCAGGTGAATGTTCAACGACTGAGATTGATCGATATAGGCTGATCTATCGGCAG 72027 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | || || |||||||| | ||| ||||||| ||| || |||| | |||| | Sbjct 72026 CCATATCAATAATAGTCTTTTGAGAAATCTCCCAAACAGTCTTGTAAAGGCCTTTAAGTT 71967 Query 62275 CTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 || || | ||| | ||| ||||| || || ||| || || ||| || | Sbjct 71966 GCTCAGGTATGTTGGGCAAATTTTGAATAGAGCCGTTGTCTGAAATGATATGATTTTTCA 71907 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | | ||| | ||| | || || | | | | | | || ||||| | || Sbjct 71906 TGTTATCGTCCCAAAGACCCAAATCCACTAGATCACGCAATAAGTAAGGATTAACAATTT 71847 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | |||||||||| ||||| | || | ||| || || || || ||||| | ||| Sbjct 71846 GAAATTCTCCAGCTAATACACGGCGTGAGTAGATGTTGGAAGTGTAAGGTTCGAAACACT 71787 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || | |||| |||||| | |||||| ||||| ||||||||||| || | || | Sbjct 71786 CGTTGTAACCCAGAATTTGGGAAGTTGAAGCAGTGGGCATAGGTGCAACTAGCAACGAGT 71727 Query 62512 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 |||| | ||| | || || |||| || |||||| | ||| || || || | Sbjct 71726 TTCTTAAACCTGTGGAAACAATCTTGGCTTTGAGTGATTCCCATTCCCACAGCTCAGAGG 71667 Query 62572 G-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCT 62624 | | | ||| |||||| | ||| || | | || || ||| Sbjct 71666 GCTTCTTGTCCCACAAGTC-------ATATTGCAAAATGCCCTGAGATGCTGGAGAACCT 71614 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 | || || || | |||||| | | |||| || || || || || | Sbjct 71613 TGGAAGGTTTCGTAGGCTCCTTCTTCGACGGCTAATTCGTTGGAGGCTTCCAAAGCTGCA 71554 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 | || || |||||||| |||| |||| || | || ||||| || |||||| ||| Sbjct 71553 TGGTAGATAGTTTCAAAAATCTGAATATTAAGCTGTTTGGCTTCTGGAGAATCAAAAGGA 71494 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 | || ||||| || || ||||| ||||||||||| | | | |||||||||| Sbjct 71493 ATTCTCAACTTCATAAAAGCATCAGCTAAACCTTGAACACCCACAGCTATAGGTCTATTA 71434 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 | | |||| || | ||||||||||| || ||| |||| | || |||||| | || Sbjct 71433 CGCATATTCGATCTCCTAGCTTCTGGAACGGGGTAAAAATTTCTGTCGATAATTCTGTTC 71374 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC----- 62919 | || | || |||||| | || | ||| || ||| | | | | Sbjct 71373 AAGTTACGAGTAACCACTTTGGTGATTTCATGCAGCTTTTCAAAGTTGTACCAGCAGTGA 71314 Query 62920 ----CATCTATTACAAACATG--TTCAAT-GCAACAGATGCCAGATTACACACGGCTACC 62972 |||| || ||| | | | || |||| ||| |||| ||||| || || | Sbjct 71313 GTATCATCGGTTTCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTC 71254 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 || | | | |||| | || ||| |||||| ||| | || || || Sbjct 71253 TCTTCCGGGGAAGAGTATTCAACAATTTCACAGCAAAGGTTAGAGGATTTAATGACACCC 71194 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 || || | || ||| | ||||||||||| ||||||||||| || ||||||||||||||| Sbjct 71193 AAGTTCTTCTGGTTAGTTTTTTTGTTACAAGCATCCTTATACAGCATGAATGGAGTACCA 71134 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 63152 ||||| | || | || | || || | ||| | | | || || || | |||| Sbjct 71133 GTTTCTGTTTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGGGCTTTGAT----GGTTTG 71078 Query 63153 TATCTC----CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 | | | | ||| |||||||| |||||| || || || ||||| | || Sbjct 71077 TCTTCCACGACCTTCCTTTTCGTATCTTTCGTACAATTCCTCAAATTCATCTCCATAGAC 71018 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 | | | | | |||| |||| ||| | | || | ||| || || | | | || Sbjct 71017 GTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTAC 70958 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || |||||| || |||||||| ||||| | ||| |||| ||||| | ||| || Sbjct 70957 TCTTTTCATGAACAGATCAGGGATCCACAAAGCGGGGAATAAGTCTCTAGCTCTGATCTC 70898 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 ||| || || ||||| || ||| | ||| || | || || | |||||| || || Sbjct 70897 CTCTTTACCATGGTTCTTACGAATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTC 70838 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 |||||| | || | | ||||| |||||||| || || || || | || | ||| || Sbjct 70837 CAAGTACAAAGCAAATGCACCAGGACGTTTGTTACCACCTTGGTCAACATAACGAGCAGT 70778 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| || | || |||| ||||||||||||||| || || |||| || ||||| | || Sbjct 70777 GTTGTTGAAGACCCTCACCATTGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAAT 70718 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||| ||| |||||||||||||| ||| | ||| ||||| || || |||| || Sbjct 70717 GTAGGATCCTGTGGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGA 70658 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 |||||| || ||| || || || || || |||||||| || ||||| |||| Sbjct 70657 GATTAAAGCACATTCCTTCAAAGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGC 70598 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 || || ||||| |||||||| | ||| || || || ||||| | |||||||| Sbjct 70597 AACTAAGAAACATGATGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGA 70538 Query 63689 AGCGTGCGTAAACCATTT----TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63744 || || || || | || ||| |||| || || || |||||| || | | Sbjct 70537 GGCATGAGTGAAATACTTCTGACTCATAAAG----TTATAAGTTTCAATAACTCTTGCAA 70482 Query 63745 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 | || |||||| || | || |||||||| | || ||| ||||| | ||| ||| Sbjct 70481 TGTCATCACCATGAATGCCGATAGCAACACGCATAATCAAGTGTTGAGGACGTTCTGCAA 70422 Query 63805 TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63864 || || ||| ||| | ||| ||| ||||||| || || || ||||| ||||| | Sbjct 70421 CATTACCATTAATTCTCAGAAGGTAAGATCTTTCCAAGGTCTTGAATCCAAAGTAGTTAT 70362 Query 63865 ATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 | |||||||| ||||| | |||| | || || |||| ||| Sbjct 70361 ACTGAAAGTCTCTATCGTAGACAATAGCAGAGTTCAGCTCATC 70319 >seq42 Length=135705 Score = 170 bits (188), Expect = 2e-37 Identities = 574/882 (65%), Gaps = 14/882 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| || | |||||||| || || ||||| || |||| || || || Sbjct 4119 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 4178 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| ||||| |||||| | || ||||| | ||||| |||| | | Sbjct 4179 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGT 4238 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | ||| || || ||||| || | ||| ||||| || ||||| || | | Sbjct 4239 AGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAG 4298 Query 33471 TTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || |||||||| | || ||| | | || ||| || || || | ||| ||||| Sbjct 4299 GAGACAGGAAGAGCGTCTGTGAAGTACCTTTT-TTCGATCTCGACAGCCTCTGTGATAAT 4357 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | |||| |||| ||||| | | || |||||| ||| | ||| || || || Sbjct 4358 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 4417 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 || ||| | ||||||||||| | ||| | || || || || || | || ||||| Sbjct 4418 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 4477 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || | ||| || | ||| || || ||||| || ||||| ||||||||||| || || Sbjct 4478 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 4537 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAA-CCGGCGCTGTCATGTATCCA-CT 33765 || ||||| ||||||| | | || | | || | || ||| ||||| || Sbjct 4538 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 4597 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 || ||||| || ||||| | ||| | ||| || || || || |||||||| || || Sbjct 4598 CATG-GCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGA 4656 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGA 33883 | | || || |||||| | |||||||| |||| || || || | || || Sbjct 4657 ATTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGA--GTAAGTCTCGGA 4714 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 33943 |||||||| || || ||||| || ||||| || ||| | || |||| || || || Sbjct 4715 GTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAAC 4774 Query 33944 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 || | || || ||| | || |||||||| || || || ||| ||| ||||| || Sbjct 4775 CTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAA 4834 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTC-GTCTGGT--GTTAGTTTATTCCAATCATT 34060 || | || || || ||||||| | | || | | |||||||| |||| Sbjct 4835 GGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATG 4894 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | ||| ||| | || | ||| || | |||||||| || || || |||| || || Sbjct 4895 CAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTA 4954 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||| | |||||| || || || | | ||||| | ||||| Sbjct 4955 CATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAA 4996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816324619360