Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq42 242 4e-59 >seq42 Length=135705 Score = 242 bits (268), Expect = 4e-59 Identities = 569/853 (67%), Gaps = 7/853 (1%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || ||| |||||| ||||| || ||||| |||||||| ||| || || || Sbjct 4119 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 4178 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| || || |||||||| |||||| | |||| || | || || ||| | Sbjct 4179 TCCATGAAGTCAAATGGATT-GTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAG 4237 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 || ||| ||||||| ||||||| ||| || |||| || || ||||| || | || Sbjct 4238 TAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAA 4297 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||||| | || || | |||||| || |||||||| | ||||| Sbjct 4298 GGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAAT 4357 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 | | || || || | | | || |||| ||| ||| | || || ||||| Sbjct 4358 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 4417 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||| || | ||||| ||||| | |||||| || || || || || || |||||||| Sbjct 4418 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 4477 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 | |||| || || ||||| || || | ||| || ||||| |||||||| || ||||| Sbjct 4478 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 4537 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||| ||||| || || | | ||||| | ||| |||| | | | || |||||| | Sbjct 4538 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 4597 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 | ||||| |||| |||| ||| ||| | || || ||||| |||||||| | Sbjct 4598 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAA 4657 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 ||| |||||| | | | ||||| |||||||| || ||| || | || ||||| Sbjct 4658 TTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTG 4717 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||| || || ||||| ||||| ||||| ||| | ||||| | ||| ||||| Sbjct 4718 AATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAACCTC 4777 Query 14028 CG-AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | | | |||| |||| ||||||||||||| |||||||| ||| || ||||| || | Sbjct 4778 AGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAAGG 4836 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTA 14143 | | | | || ||| ||| || | || ||| | | || ||||| || | Sbjct 4837 CAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATGCA 4896 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203 |||||||| || |||| ||| ||| | |||||||| ||| | || | || |||| Sbjct 4897 AATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTACA 4956 Query 14204 TTACCCATATTTC 14216 || ||| || || Sbjct 4957 TTTGCCAGATATC 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587830857680