Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq42 154 2e-32 >seq42 Length=135705 Score = 154 bits (170), Expect = 2e-32 Identities = 590/919 (64%), Gaps = 25/919 (3%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||| |||||| |||||| |||||||| || || || || || |||| || || Sbjct 4119 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 4178 Query 21245 TCCATAAAATCAAATGGATT-TTCAGATT-TAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||| || ||||||||||| || | || || | |||| | ||||| || | Sbjct 4179 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTG--CCCAGAGCTACCA 4236 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 || ||| || || || || || | ||| || ||||| || || ||||| || | | Sbjct 4237 GTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTA 4296 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | ||||||||||| | ||| || | |||||| || ||| || || || | Sbjct 4297 AGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAA 4356 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAAT----AATTGTTTAAACATCAAACAT 21478 | ||| || ||| | || || | | | || || ||| | ||| || Sbjct 4357 TCTTT----TCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAA 4412 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||| || || || || || || | || | ||||| || || || ||||| Sbjct 4413 GCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCT 4472 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | |||||||| || ||||| || || || ||||| | |||||||||||| || Sbjct 4473 GGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATA 4532 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 |||||||| ||||| || ||||| || |||||| || | | || | ||| | ||| Sbjct 4533 CCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATC 4592 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 ||| | ||||| | ||||||||||| ||||| ||| || || || || || || Sbjct 4593 CATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAAC 4652 Query 21719 AGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 || || || || | | ||| | ||| || | | Sbjct 4653 AG--GAATTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCT 4710 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 | || || || || || ||| ||||| || |||||||| ||| |||| || | | || Sbjct 4711 CGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTT 4770 Query 21837 GAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||||| | | | |||| || ||||||||||||| || || || ||| ||| ||| Sbjct 4771 GAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCA 4829 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT----TTTTTCCA 21951 || || || | | | || || || ||| ||||| ||| || || ||||| Sbjct 4830 AAGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATC-GTTCATACGATTATTCCA 4888 Query 21952 ATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTT 22011 || ||||| || | |||| ||| |||| ||||||||| ||| |||| Sbjct 4889 GTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTG 4948 Query 22012 TTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTATTTGA 22071 || ||||| ||||||||| | || | | || || | ||||| | | ||| Sbjct 4949 CTTGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAAC-GACGTTTAT 5007 Query 22072 T-TCAACTAAAAGTGGTTC 22089 | |||||||| |||||||| Sbjct 5008 TCTCAACTAAGAGTGGTTC 5026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899722900880