Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 172 7e-38 seq42 134 2e-26 >seq38 Length=207422 Score = 172 bits (190), Expect = 7e-38 Identities = 939/1474 (64%), Gaps = 53/1474 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||| || || || ||||| |||| ||||| ||||||| || || Sbjct 71817 TAGATGTTGGAAGTGTAAGGTTCGAAACACTCGTTGTAACCCAGAATTTGGGAAGTTGAA 71758 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| ||||| | || | ||| | | ||| ||| | Sbjct 71757 GCAGTGGGCATAGGTGCAACTAGCAACGAGTTTCTTAAACCTGTGGAAACAATCTTGGCT 71698 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 ||||| | ||||| || | | | || | || | ||||||| ||| | || | Sbjct 71697 TTGAGTGATTCCCATTCCCACAGCTCAGAG--GGCTTCTTGTCCCACAAGTCATATTGCA 71640 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 || || || || ||||| || || | || || || || | || || | | || | Sbjct 71639 AAATGCCCTGAGATGCTGGAGAACCTTGGAAGGTTTCGTAGGCTCCTTCTTCGACGGCTA 71580 Query 116141 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 ||||| | || || | ||||| || || || || |||||||| || ||| | Sbjct 71579 ATTCGTTGGAGGCTTCCAAAGCTGCATGGTAGATAGTTTCAAAAATCTGAATATTAAGCT 71520 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||||| || |||||||| | | | || ||||| |||| || | ||||| Sbjct 71519 GTTTGGCTTCTGGAGAATCAAAAGGAATTCTCAACTTCATAAAAGCATCAGCTAAACCTT 71460 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGGA 116319 | ||||| | | || || | || | |||||| || | | ||| ||| | |||| Sbjct 71459 GAACACCCACAGCTATAGGTCTATTACGCATATTCGATCTCCTAGCT-TCTGGAACGGGG 71401 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 |||||||| || ||||||| || || | || || || || || ||||||||||| Sbjct 71400 TAAAAATTTCTGTCGATAATTCTGTTCAAGTTACGAGTAACCACTTTGGTGATTTCATGC 71341 Query 116380 AGCTTTTCGTAATCAAAACTGC---GAGTCTCTTCATTG---ACATACTTAGGAAGGGCG 116433 |||||||| | | | | || |||| || || | ||| | ||||| || Sbjct 71340 AGCTTTTCAAAGTTGTACCAGCAGTGAGTATCATCGGTTTCAACAAAGGCTGGAAGAGCA 71281 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || || |||| ||||| |||| ||||| ||| || ||| || | |||||| | Sbjct 71280 ATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAATTTC---A 71224 Query 116494 CA-CAAA--TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| || || |||||| ||||||||||| || || | ||| ||||||| Sbjct 71223 CAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTTACAA 71164 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 |||||||| || ||||| |||| || || || || ||||| | || || || || | | Sbjct 71163 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 71104 Query 116611 CATACATCGGCGGCTGGCACAGTGGCGTTGGCT----CGCCCCTCCTCCTCGTACTTTGT 116666 || | | |||| | || ||| || || || |||| ||||| || Sbjct 71103 CAAAGCTTTTGGGCTTTGATGGT----TTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 71048 Query 116667 GTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGAC 116725 ||| | ||||||| || || || | || | || | || || || || | | |||| Sbjct 71047 GTACAATTCCTCAAATTCATCTCC-ATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAG 70989 Query 116726 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 |||| || | ||| | ||| || || || | |||||||| || || |||||||| | Sbjct 70988 AGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGATCCACA 70929 Query 116786 GCGCCGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844 || | ||| | || | | | || || || | | || || || ||| | || Sbjct 70928 AAGCGGGGAATAAGTCTCTAGCTCTGATCTCCT-CTTTACCATGGTTCTTACGAATATCA 70870 Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA 116904 | ||| | | ||| || || ||||| || |||| ||||| || | || || || Sbjct 70869 ATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAG---GA 70813 Query 116905 CG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 || |||| | |||| ||||| | || || ||| || || | | ||||||| Sbjct 70812 CGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTGGA 70753 Query 116959 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATC 117017 || ||||||| || || || || || ||| || | ||| ||| | | || Sbjct 70752 ATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGT-GGCACGAATATT 70694 Query 117018 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 || ||||||| |||||| || || || || |||||| || || ||| | | | | Sbjct 70693 ATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAAGT 70634 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 117137 |||| || || || || |||||| || | || | | ||| || |||||||| Sbjct 70633 ATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACATTTG 70574 Query 117138 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGA 117197 ||| || ||||||||||| || || || || | || || |||| |||| || || Sbjct 70573 TGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAA-ATAC-TTCTGA 70516 Query 117198 CATCTTATCGT---AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 | || || || | || || | || | |||||| || || ||||| ||||| | Sbjct 70515 C-TCATAAAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAATGCCGATAGC 70457 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTC--CATCAGGATACCATCGAGCCTCTGGAGG 117312 || ||||||| || || ||| || ||| || || |||||| | ||| | ||| Sbjct 70456 AACACGCATAATCAAGTGTTGAGGACGTTCTGCAACAT--TACCATTAATTCTCAGAAGG 70399 Query 117313 TAAC-TCTTCTCCAAGGTCTTGAGACCAAAATAG 117345 ||| |||| ||||||||||||| ||||| ||| Sbjct 70398 TAAGATCTT-TCCAAGGTCTTGAATCCAAAGTAG 70366 >seq42 Length=135705 Score = 134 bits (148), Expect = 2e-26 Identities = 388/587 (66%), Gaps = 25/587 (4%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | |||||||| | | | || || ||||| |||||| || ||| Sbjct 4412 AGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACC 4471 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||||||| | ||||||||||||||| || | | ||| || || || |||||||| Sbjct 4472 TGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGAT 4531 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATC-- 127695 ||||| ||| ||||| |||| | ||| || || || | | | || ||| Sbjct 4532 ACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGC----GAACAATGCATCGTCATCAG 4587 Query 127696 -AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-T 127753 || ||| |||| ||||| | ||||||| | ||||||||| | ||||| ||| || | Sbjct 4588 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 4647 Query 127754 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 | | | || ||| | ||| ||||||||||||||| |||| || || || | Sbjct 4648 TGAACAGGAATTCAGAC---TCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGT 4704 Query 127812 ATGTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCG 127870 | || ||| ||| | | | ||| || | ||| | |||| || | |||||| Sbjct 4705 AAGTCTCGGAGTGAATGTTCTCCATCAT-GATCTGGAAACCGTAAAAGCATTTTGCTTCG 4763 Query 127871 CTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 127930 | || |||||| | ||||| | | || ||| ||||| || || || Sbjct 4764 GGAAGTTGAACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAG 4823 Query 127931 CCAGCAAAAAACGCCAGGA---TATACTTTATGAATTTCTGTTCATTCTCGTTCA---GG 127984 ||||||| || || |||| | | | | |||||| |||||| ||||||| | Sbjct 4824 GCAGCAAAGAAGGCAAGGACTCTCGAGATGAAGAATTT---TTCATTATCGTTCATACGA 4880 Query 127985 GTCTTCCAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATT 128044 | |||||||| | | |||||| || |||| ||||| ||||||||| | | Sbjct 4881 TTATTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCT 4940 Query 128045 TGAGCCTTCTTATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091 | |||| ||| || | || ||||| | | | ||||||| ||||| Sbjct 4941 TCGGCCTGCTTGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAA 4987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505957647920