Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38 215 2e-50 seq10 102 2e-16 seq14 100 8e-16 seq1 98.7 3e-15 seq42 89.7 2e-12 >seq38 Length=207422 Score = 215 bits (238), Expect = 2e-50 Identities = 626/947 (66%), Gaps = 25/947 (3%) Strand=Plus/Minus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| ||||||| |||| ||||| || |||||||| | | |||||| ||||| Sbjct 71287 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 71228 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 |||||||| |||||||| || ||| || || ||||||||||||| ||| |||| Sbjct 71227 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 71168 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 |||||||||||| || || ||| |||| || || || || | ||||| || || || Sbjct 71167 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 71108 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGACTCATATTTCA 155820 ||| || | |||| || || | |||| | | |||||| || ||| | Sbjct 71107 GTACCAAAGCTTTTGGGCTTTGATG-GTTTGTCTTCCACGACCTTCCTTTTCGTATCTTT 71049 Query 155821 TATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGG----CACTTAT 155874 |||| ||| || || || || || || || ||||| ||||| Sbjct 71048 CGTACAA--TTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTT-- 70993 Query 155875 CGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAATACATCACTC 155933 || | ||||| | |||| ||| | | | ||| | | ||| || | |||| Sbjct 70992 --GGAGAGAACAGGGTCCAATCGCCATT-CTGTTCTACTCTTTTCATGAACAGATCAGGG 70936 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCG 155992 ||| | ||| ||| | ||| || || | ||| |||||| | || || ||||| || Sbjct 70935 ATCCACAAAGCGGGGAATAAGTCTCTAGC-TCTGATCTCCTCTTTACCATGGTTCTTACG 70877 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 | || | ||| | || || | ||| |||||||| |||| |||||| ||| Sbjct 70876 AATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACC 70817 Query 156053 ATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 | | ||| ||||| || || ||||| |||||||| || |||||||| | | ||| Sbjct 70816 AGGACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCAT 70757 Query 156110 AGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAAC 156169 |||||||||||||| ||||| || || || || ||| | || || | | |||| Sbjct 70756 TGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAAT 70697 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 ||||||||| || | ||||| ||||| | ||| || ||| ||| |||||||| | Sbjct 70696 ATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAA 70637 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 ||||| | |||| |||||||| || ||||| ||| | | || | || || | Sbjct 70636 AGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACAT 70577 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 ||| || | || || |||||||| || || ||||| | |||||| | |||||||| | Sbjct 70576 TTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTG 70517 Query 156350 AGACATATAATCGTATGTCTCCTTAA-TCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408 | |||| | | || || || ||| |||| ||| | | || ||||| | ||||| Sbjct 70516 ACTCATAAAGTTATAAGTTTCAATAACTCTT-GCAATGTCATCACCATGAATGCCGATAG 70458 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGG 156467 || | ||| || || |||||||| ||| ||| || | |||| ||||| ||||||| Sbjct 70457 CAACACGCATAATCAAGTGTTGAGGACGTTCTGCAA-CATTACCATTAATTCTCAGAAGG 70399 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || | | ||||| || || || || || || | | || |||| || Sbjct 70398 TAAGATCTTTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTC 70352 >seq10 Length=289199 Score = 102 bits (112), Expect = 2e-16 Identities = 380/579 (66%), Gaps = 30/579 (5%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||||||||| || | | ||||||||||||| || || | |||| ||| | || Sbjct 205982 ACACACATGTACTCGGAAAGCATCAGATGCTTCCATTAATCTTTCCTTCAAGAAACCAGC 206041 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||| | ||||||||| || | ||||| || |||||||||||||||||||| || Sbjct 206042 GGCACCGTGAGCAATCATACAGTCTCTTTCCATCTCTCCGAAACGAAGACCACCATCACG 206101 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT-GAGATTAACCATAGGACCGATGGAGCGGCTAT 251602 | ||||| || |||| || | || ||| | | ||| || ||| | | || Sbjct 206102 GGATCTACCTTCTACAGGTTGTCTGGTCAAGACT-TGTACAGGTCCTCTGGCTCTGGCAT 206160 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGC 251662 | |||||||| |||||||| | || | |||||| ||| || || | ||| | | Sbjct 206161 GAATCTTATCATCCACCATATGTCTCAGTCTCTGGTAATATGTTGGTCCAAAGAATA-CC 206219 Query 251663 TCGAAGGCAT---TTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 | | | ||| || | ||||| | | || ||||| ||||| ||| |||||| Sbjct 206220 TGG--GCCATTAATTTTTTACCAGTGTGTCCATTGTACATTACTTCAAATCCTCTAGATT 206277 Query 251720 CATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAAC 251776 ||| ||| | || | || | ||| | || ||| | || ||| || |||| Sbjct 206278 GATACCCATTATCCCTCAGAAGGTTGGAAACCGCAT--CCACTGTTAAATCTG-TAAA-- 206332 Query 251777 TGGTG--CCGTCTCCGTAAAGAC--CCATTTGAATCAAC---ACTTTGCCTAAAAGTGTC 251829 ||||| |||| || | | || | | | ||| |||| ||| || ||| | Sbjct 206333 TGGTGTAGCGTCACCTTCATAACCTCTAATAGAACCAACCTTACTCAGC--AAA---CAC 206387 Query 251830 TCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCG 251889 || | | || || | ||||||||| ||||||||||| || || || || | ||| Sbjct 206388 TCAATTAAGTGCGCAACCGTCATACGAGAAGGAATAGCATGTGGGTTAATAATCAAATCG 206447 Query 251890 GGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGT 251948 || | || || ||| |||| |||||||| | | | | |||| | ||||| || Sbjct 206448 GGAACGATACCCTCTGCACTGAATGGCATATCTTCGTGC-CTATAAGTAACACCAATGGT 206506 Query 251949 TCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || |||||||| || |||||||||||||| Sbjct 206507 ACCCTTCTGACCGTGACGGGAGGCAAACTTATCACCAAT 206545 >seq14 Length=162297 Score = 100 bits (110), Expect = 8e-16 Identities = 309/470 (66%), Gaps = 21/470 (4%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAAT 288942 || || | ||| ||||||||||| | ||||| ||||||| | || | | ||| Sbjct 3835 TCCAAAACATCAGCTCTGTTTGTACCAGCCAAGACAACAACATGGTCAGAACTATCAAAA 3894 Query 288943 CCATCCATACTTGT-TAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC- 289000 |||||||| || | || | ||||| | ||| || ||||||| || ||||| Sbjct 3895 CCATCCAT-CTCGACTAGTAGCTGATTTAAAGTTGCCTCTTTTTCATCGTT---ACCTCC 3950 Query 289001 --TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | ||| ||| | | || | || | ||| | ||||||||||| |||| ||| || Sbjct 3951 CATGGAACCACTCTTA---CTACGTTCTCGACCGATCGCATCAATTTCATCAACGAATAT 4007 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCA 289116 | | | || | | | ||| || |||| |||||| || | || ||||| |||||| Sbjct 4008 GATAGATGGCGCCATCTTTCTAGC--TTGCTGAAATAAATCACGAACTCGGGAAGCTCCA 4065 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCT 289176 | ||| ||| ||||||| ||||| |||||| | || || | |||| || ||| Sbjct 4066 ACACCCACAAACATTTCCACAAACTCAGAACCCGAAACAGACAAAAATGGAACTCCAGCT 4125 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 ||||| || |||| |||| || | ||||||||| || || || || | | | ||| Sbjct 4126 TCGCCAGCAGTTGCCTTCGCTAGCAATGTCTTACCAGTACCTGGAGGAC---CAGAAAGA 4182 Query 289237 A---CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 | | || |||| | |||||| || || |||||||| ||| |||| | || Sbjct 4183 ATTGCACCTCTTGGAATTTTTGCTCCTAGTTTCTCATATTTCTTAGGATTCTTCAGGAAC 4242 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || | |||| || ||| | ||| || ||||| || || || || || Sbjct 4243 TGAACGAATTCCATAATTTCTTCTTTAGCTTCATCGCAACCCGCCACGTC 4292 >seq1 Length=598235 Score = 98.7 bits (108), Expect = 3e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||| | ||||||||||||||||||||| ||| || ||||| |||||||||||||| | Sbjct 70745 CTTCACTAAACGACGCTGAATATAACCTGTTTCAGCAGTTTTCACAGCTGTATCAATCAA 70686 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||| |||||||| |||| || || ||||| | ||||| ||| Sbjct 70685 ACCTTCACGACCAGCCATGGCGTGAAAGAAGAACTCTTGCGG 70644 >seq42 Length=135705 Score = 89.7 bits (98), Expect = 2e-12 Identities = 288/436 (66%), Gaps = 22/436 (5%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGG 133289 || || |||||||| ||| |||||||| |||||| || | ||| | || | | Sbjct 4837 GCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAAAAT--TTCAGTG 4780 Query 133290 GAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATA 133349 || |||||||| ||||||| |||||| || | ||||| |||||| || | Sbjct 4779 CTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACA 4720 Query 133350 TCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG- 133408 | || || || || || || |||||||||||||||||||| |||| ||| Sbjct 4719 TTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGA-----TCCAAAAGA 4665 Query 133409 --CACAA--ACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACT 133463 | || || ||||| |||| | | || |||| ||||| ||| | || |||||| Sbjct 4664 GTCTGAATTCCTGTTCAATGCCA-TCGAGACCATTCCATGTATCAAAGAAAAGGCTGACT 4606 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 |||| || | |||||| || | ||| || ||| ||| | ||||| || | Sbjct 4605 GGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCG 4546 Query 133524 CTGTAGTAGAGGGCA--tttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAA 133580 ||| || ||||| | || ||||||| | | || ||| ||||| || ||| | || | Sbjct 4545 CTGCTGTTGAGGGTATCTTCTTTTCAG-GAT--CTTTTGCTTCTATCTTCTGGTTGAAGA 4489 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 || | ||| | | || || || || || || || ||||||| || ||||||| | Sbjct 4488 AGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGAT 4429 Query 133641 TTCACACCGAATTTGC 133656 | ||||| || ||||| Sbjct 4428 TACACACTGACTTTGC 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814545058594