Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016535.1_202016-02-08] 162 sequences; 9,346,869 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 327 2e-84 seq42 212 9e-50 >seq38 Length=207422 Score = 327 bits (362), Expect = 2e-84 Identities = 1221/1901 (64%), Gaps = 41/1901 (2%) Strand=Plus/Minus Query 68363 CCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422 |||| || | |||||||||||||| | | || | || ||||| || |||||||||| Sbjct 72206 CCTTGTCAACTGTAAACTGAATGGCAGCAGCGGCAGCTTGAGTACGCAGGTAGTACATAC 72147 Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482 | || || | ||| |||| || || || |||||||| || | ||| | ||| Sbjct 72146 CAGTCTTTAATCCTTTCTTCCAACCATAAAAGTGCATACTGGTCAATTTACCCATAGTTG 72087 Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 || | | ||||| |||| ||| ||| ||||||||| | ||| |||||| || | Sbjct 72086 GAGCCATCAGGTGAATGTTCAACGACTGAGATTGATCGATATAGGCTGATCTATCGGCAG 72027 Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATAT 68602 |||| | |||||| ||||||||| ||| ||||||| |||||| ||| ||| | | Sbjct 72026 CCATATCAATAATAGTCTTTTGAGAAATCTCCCAAACAGTCTTGTAAAGGCCTTTAAGTT 71967 Query 68603 CATCTGGAAGGCTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGA 68659 || || | | | | ||||||||| || || || || || || ||| || | Sbjct 71966 GCTCAGGTATGTTGGGCAAATTTTGAATAGAGCCGTTGTCTGAAATGATATGATTTTTCA 71907 Query 68660 TCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTT 68719 | | ||| | ||| | ||| || | | | | | | |||||||| |||| Sbjct 71906 TGTTATCGTCCCAAAGACCCAAATCCACTAGATCACGCAATAAGTAAGGATTAACAATTT 71847 Query 68720 GAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 68779 ||||||| |||| ||| || | || | ||| || || || || ||||| | | | | Sbjct 71846 GAAATTCTCCAGCTAATACACGGCGTGAGTAGATGTTGGAAGTGTAAGGTTCGAAACACT 71787 Query 68780 CATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTAT 68839 | || | ||||||||||| | |||||| ||||| ||||||||||| || | || | Sbjct 71786 CGTTGTAACCCAGAATTTGGGAAGTTGAAGCAGTGGGCATAGGTGCAACTAGCAACGAGT 71727 Query 68840 TTCTAAGACCATGTGTTATGATT-TTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 |||| | ||| |||| | | | || |||| || || ||| ||||| || ||||| Sbjct 71726 TTCTTAAACC-TGTGGAAACAATCTTGGCTTTGAGTGATTCCCATTCCCACAGCTCAGAG 71668 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || | ||| | || ||||| | ||| || | | ||| || || | | Sbjct 71667 GGCTTCTTGTCCCACAAGTCATATTGCAAAATGCCCTGAGATGCTGGAGAACCTTGGAAG 71608 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 ||||| || | |||||| | | |||| ||| || || || || | | || Sbjct 71607 GTTTCGTAGGCTCCTTCTTCGACGGCTAATTCGTTGGAGGCTTCCAAAGCTGCATGGTAG 71548 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || ||||| ||||||| |||| || | || |||||| || ||| || ||| | | | Sbjct 71547 ATAGTTTCAAAAATCTGAATATTAAGCTGTTTGGCTTCTGGAGAATCAAAAGGA-ATTCT 71489 Query 69079 AAAAGA-ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 || ||||| ||||| || || || ||||| || | | | |||||||||| | | | Sbjct 71488 CAACTTCATAAAAGCATCAGCTAAACCTTGAACACCCACAGCTATAGGTCTATTACGCAT 71429 Query 69138 ATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| || || ||||||||||| || ||| |||| | || |||||| | || | || Sbjct 71428 ATTCGATCTCCTAGCTTCTGGAACGGGGTAAAAATTTCTGTCGATAATTCTGTTCAAGTT 71369 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAAC 69257 || || ||||| | || | || || ||| | | | | | || | Sbjct 71368 ACGAGTAACCACTTTGGTGATTTCATGCAGCTTTTCAAAGTTGTACCAGCAGTGAGTATC 71309 Query 69258 A--------AACATATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 | |||| | | || || | ||| || | ||||| || || ||| | Sbjct 71308 ATCGGTTTCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTC 71249 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 | | |||| | || || || || ||| |||| || |||| || Sbjct 71248 CGGGGAAGAGTATTCAACAATTTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTT 71189 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 | ||| ||| | ||||||||||| || ||||| || || || || |||||||||||||| Sbjct 71188 CTTCTGGTTAGTTTTTTTGTTACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTC 71129 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA--- 69482 | || | || | || | | ||||| || || || ||| |||| Sbjct 71128 TGTTTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGGGCTTTGAT---GGT-TTGTCTTC 71073 Query 69483 -ACGCTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATC 69539 ||| || ||||| ||| | ||| | || || ||||||||||| | || || Sbjct 71072 CACGACCTTCCTTTTCGTATCTTTCGTACAATTCC--TCAAATTCATCTCCATAGACGTC 71015 Query 69540 ATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCG 69599 | | |||||| |||| ||||| | | || | ||| | ||| | | |||| Sbjct 71014 GGCAAGGCCAGGAGCTTCACTTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCT 70955 Query 69600 TTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||| || ||||| || ||||| | ||| || | ||||| | ||| | || || Sbjct 70954 TTTCATGAACAGATCAGGGATCCACAAAGCGGGGAATAAGTCTCTAGCTCTGATCTCCTC 70895 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 || || || || || ||| | || | | || || | ||||||||| || | Sbjct 70894 TTTACCATGGTTCTTACGAATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAA 70835 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 || | || | | || || ||||| || || || || || | || | |||||||| Sbjct 70834 GTACAAAGCAAATGCACCAGGACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTT 70775 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 || |||| |||| ||| |||||||||||||| || |||| || || |||| ||| || Sbjct 70774 GTTGAAGACCCTCACCATTGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTA 70715 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGAT 69899 |||| | || ||||||||| ||| | ||| ||||| || || |||| ||||| Sbjct 70714 GGATCCTGTGGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGAT 70655 Query 69900 TAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 || |||||| ||||| || || || || || || || ||||| |||| || Sbjct 70654 TAAAGCACATTCCTTCAAAGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAAC 70595 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 | ||||| |||||||| | || || || || ||||| | |||||||| || Sbjct 70594 TAAGAAACATGATGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGC 70535 Query 70020 GTGAGTGAACCATTT----TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT 70075 |||||||| | || ||| |||| || || ||||||||| || | | || | Sbjct 70534 ATGAGTGAAATACTTCTGACTCATAAAG----TTATAAGTTTCAATAACTCTTGCAATGT 70479 Query 70076 C-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 | ||| |||||| || || || |||||||| | || || ||||| |||||| | Sbjct 70478 CATCAC-CATGAATGCCGATAGCAACACGCATAATCAAGTGTTGAGGACGTTCTGCAACA 70420 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||| ||| ||| ||| ||||| ||| |||||| || || || ||||| ||||| || Sbjct 70419 TTACCATTAATTCTCAGAAGGTAAGATCTTTCCAAGGTCTTGAATCCAAAGTAGTTATAC 70360 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATC 70235 ||||||||| ||||| | |||| |||| || || | ||| Sbjct 70359 TGAAAGTCTCTATCGTAGACAATAGCAGAGTTCAGCTCATC 70319 >seq42 Length=135705 Score = 212 bits (234), Expect = 9e-50 Identities = 565/854 (66%), Gaps = 12/854 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| ||| ||| | || ||||| || || ||||| || |||| || || || Sbjct 4119 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 4178 Query 39386 TCCATGAAATCAAACGGATTAGTTG-CATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||||| ||||| ||||| |||| | || || ||||| || | || | Sbjct 4179 TCCATGAAGTCAAATGGATT-GTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAG 4237 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | ||| || ||||| || || | || ||||| || ||||| || | | Sbjct 4238 TAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAA 4297 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || ||||| || || | || ||||||||| || || |||||||| || || Sbjct 4298 GGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAAT 4357 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | || | || ||||| | | || |||||| ||| | ||||| || || Sbjct 4358 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 4417 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||| |||| ||||| ||||| | ||| | || || || || || | || ||||| Sbjct 4418 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 4477 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 ||||| | ||| || | ||| || || | |||||||||||| ||||||||||| || || Sbjct 4478 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 4537 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA---TCATTATGTATCCACTT 39801 || || || || ||||| | | || || | || | |||| | ||||| | Sbjct 4538 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 4597 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTT-ACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | ||||| ||||| || |||||| | ||| || || || || || ||||| || || Sbjct 4598 CATGGCCCAGTCAGCCTT-TTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGA 4656 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | | || | |||||| | || ||||| || | || || | || || | Sbjct 4657 ATTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGT 4716 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 | ||||| || ||| ||||| || |||||||| ||| ||||||| | || ||| |||| Sbjct 4717 GAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAACCT 4776 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | | || || ||||| |||| |||||||| || || || ||| || ||||| || | Sbjct 4777 CAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAAGG 4836 Query 40041 CCAATACATGTTTA-ATAAAATATTTTTC---ATCGGGTGTCAATTTATTCCAGTCATTG 40096 | | || | | | || || ||||||| |||| | ||||||||||||| Sbjct 4837 CAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATGC 4895 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | ||| || | |||| ||| ||||| |||||||| || || || |||| |||||| Sbjct 4896 AAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTAC 4955 Query 40157 ATGTTCCATATATC 40170 || | ||| ||||| Sbjct 4956 ATTTGCCAGATATC 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907409009680