Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016545.1_202016-02-08]
170 sequences; 9,365,723 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4 122 8e-23
seq19 118 9e-22
seq12 98.7 9e-16
>seq4
Length=489129
Score = 122 bits (134), Expect = 8e-23
Identities = 169/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243
||| | || |||||||||||||||||||| || || || || || |||||| | || ||
Sbjct 410095 GAAGCCAAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTG 410036
Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303
|| | ||||||| | | || | ||||| | || ||||||||| || | ||
Sbjct 410035 GAGTCTTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCT 409976
Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363
|| ||||| |||||||| || || ||||| || || ||||| || || ||| ||
Sbjct 409975 CCTGACCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCT 409916
Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || ||||| ||||| || || ||| | || |||| |||||| |||| || |||
Sbjct 409915 GACTACAACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 409859
>seq19
Length=311624
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||||| || || || || ||||| | || || || | ||
Sbjct 97993 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 98052
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | |||||| | || ||||||||||| | || || ||||||
Sbjct 98053 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 98112
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| || || |||||||| || ||| | ||||| ||
Sbjct 98113 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 98172
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||||| ||||| |||||||| ||||| | ||||| || || |||
Sbjct 98173 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGGT 98220
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||||| || || || ||| | || || ||| ||||
Sbjct 97309 ATGCAGATCTTCGTCAAGACCTTGACAGGTAAGACTATTACCCTTGAGGTAGAATCGTCG 97368
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || |||| | | | ||| | | |||||||||| | || || |||||
Sbjct 97369 GATACCATTGACAACGTTAAGTCTAAGATTCAAG-ACAAGGAAGGTATTCCTCCTGACCA 97427
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||| | || |||||||| || || |||||||| || ||| | || || ||
Sbjct 97428 GCAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAA 97487
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| ||||| ||||| ||||| || |||| | |||||||| || ||||
Sbjct 97488 CATCCAAAAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGAGGTGGTA 97537
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||| | || || || || ||||| | || || || | ||
Sbjct 97537 ATGCAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 97596
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | || || | || ||||||||||| | || || ||||||
Sbjct 97597 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 97656
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| || || |||||||| || ||| | || || |||
Sbjct 97657 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAAC 97716
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| ||||| ||||| || |||| | |||||||| || ||||
Sbjct 97717 ATCCAAAAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGAGGTGGTA 97765
>seq12
Length=658291
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| ||||| |||||||| ||||| | || || || || || ||| | || || ||
Sbjct 85894 CAAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGT 85953
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||||| | || || |
Sbjct 85954 CCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTG 86013
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||| || ||| | || || ||||| || || |||||||| || ||| || || |
Sbjct 86014 ACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACT 86073
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || ||| | || ||||| || ||| |||| || ||||
Sbjct 86074 ACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTA 86127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765452746400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |