Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016545.1_202016-02-08] 170 sequences; 9,365,723 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19 125 2e-23 seq4 104 6e-17 seq12 91.5 3e-13 >seq19 Length=311624 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | ||| | |||| ||| ||| ||||| ||||| || || | Sbjct 98219 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 98160 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| | ||| || || |||||||||| ||| || || | || Sbjct 98159 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 98100 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | ||| ||||| || |||| ||| || ||||| Sbjct 98099 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 98040 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 98039 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 97993 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | || || | || ||||| ||||| || || ||||| Sbjct 97500 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAA 97441 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| || || | || || ||||| || || || || || | || ||||| Sbjct 97440 GATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTT 97381 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||||||| || || || || ||||| || |||| |||||||| Sbjct 97380 GTCAATGGTATCCGACGATTCTACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGAC 97321 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 97320 GAAGATCTGCAT 97309 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | || || | || ||||| ||||| || || ||||| Sbjct 97728 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAA 97669 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| || || | || || ||||| || || || || || | || ||||| Sbjct 97668 GATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 97609 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || ||||| || ||||| ||||| || || | ||||||||| Sbjct 97608 GTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGAC 97549 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 97548 GAAAATCTGCAT 97537 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || | || ||||| | ||| || || || || Sbjct 97956 TTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAA 97897 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| || ||| | || || ||||| || || || || || | || ||||| Sbjct 97896 GATCAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 97837 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || ||||| || ||||| ||||| || || | ||||||||| Sbjct 97836 GTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGAC 97777 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 97776 AAAAATCTGCAT 97765 >seq4 Length=489129 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | || | || || || ||||| || || || ||| Sbjct 409896 TCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAG 409955 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||||||||| | || ||||| || || ||||| || || | || ||||| Sbjct 409956 ATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 410015 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || || | ||||| ||||| ||||| || ||||| ||| Sbjct 410016 TCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACG 410075 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 410076 AAAATTTGCATTTTG 410090 >seq12 Length=658291 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || | |||||||| | ||| || || || || Sbjct 86089 TCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAA 86030 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| ||||| | || |||||||| || || || || || | || || || Sbjct 86029 ATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTG 85970 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | || || ||||| ||||| | ||||||||| Sbjct 85969 TCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACG 85910 Query 288463 AATATCTGCATTATGTTATTCTAATATT 288490 || ||||||||| | | || |||| || Sbjct 85909 AAAATCTGCATTTTTGTCTTTTAATGTT 85882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651830565260