Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016545.1_202016-02-08]
170 sequences; 9,365,723 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq19 140 6e-28
seq12 113 9e-20
seq4 96.9 7e-15
>seq19
Length=311624
Score = 140 bits (154), Expect = 6e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||||||||| | |||||| || || | ||| | | |||| || ||||| |||||||
Sbjct 98220 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 98162
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | |||| | || |||| ||| |||||||| ||||| || | || || ||||| |
Sbjct 98161 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 98102
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| || ||||| || ||| ||| || ||| |||| |||||| || ||||
Sbjct 98101 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTA 98042
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || ||||| || || |||||||||| || || | || ||||||||
Sbjct 98041 CCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 97993
Score = 136 bits (150), Expect = 8e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 97766 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 97707
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 97706 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 97647
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||||| || |||| ||||| || ||
Sbjct 97646 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 97587
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| || || ||||||||||| || || | || ||||||||
Sbjct 97586 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 97537
Score = 131 bits (144), Expect = 3e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| |
Sbjct 97263 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 97204
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|| || ||||| || || ||||| |||||||| || || ||| |||||| ||||
Sbjct 97203 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 97144
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || || || || ||||| || || ||||| |||| ||||||| ||| |||||
Sbjct 97143 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 97084
Query 192534 CATTTTATTA 192543
|||||| |||
Sbjct 97083 CATTTTTTTA 97074
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 97538 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 97479
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 97478 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 97419
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| || || || || | ||| |||||||||
Sbjct 97418 GGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCT 97359
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || ||||| || || || || | || ||||||||
Sbjct 97358 ACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 97309
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | || || || || | || | || || ||| || || |||
Sbjct 97994 ATACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 97935
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||| ||| |||||||||||||| | | || ||||||||
Sbjct 97934 GAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 97875
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||||| || |||| ||||| || ||
Sbjct 97874 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 97815
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| || || ||||||||||| || || | ||| ||||||||
Sbjct 97814 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACAAAAATCTGCAT 97765
>seq12
Length=658291
Score = 113 bits (124), Expect = 9e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | | | || | || ||||||| ||| || ||| || ||
Sbjct 86132 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 86073
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| | |||| | || |||| ||| ||||||||||| || || | ||||| ||
Sbjct 86072 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 86013
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||| || |||||||| || ||||| || || || ||||| || | || || ||
Sbjct 86012 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 85953
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | ||||| || ||||| ||||| || || | || |||||||||||
Sbjct 85952 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85896
>seq4
Length=489129
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | | || || || ||||||| ||| || ||| || || |||||
Sbjct 409859 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 409918
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| |||| |||| |||||||| |||||||||||||| | | |||||| ||||| ||
Sbjct 409919 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 409978
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || || || || || || || || |||| || || || || ||
Sbjct 409979 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 410038
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | || || || ||||| || | || || | || || ||||||||
Sbjct 410039 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 410089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984477855679500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |