Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016545.1_202016-02-08] 170 sequences; 9,365,723 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19 140 6e-28 seq12 113 9e-20 seq4 96.9 7e-15 >seq19 Length=311624 Score = 140 bits (154), Expect = 6e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 |||||||||||| | |||||| || || | ||| | | |||| || ||||| ||||||| Sbjct 98220 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 98162 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | || |||| ||| |||||||| ||||| || | || || ||||| | Sbjct 98161 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 98102 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || ||| ||| || ||| |||| |||||| || |||| Sbjct 98101 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTA 98042 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| || || |||||||||| || || | || |||||||| Sbjct 98041 CCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 97993 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| || || || | ||||| || || ||| || || ||| Sbjct 97766 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 97707 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||||||| |||||||| ||||| || | || || ||||| Sbjct 97706 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 97647 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||||| || |||| ||||| || || Sbjct 97646 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 97587 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||||||||| || || | || |||||||| Sbjct 97586 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 97537 Score = 131 bits (144), Expect = 3e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| | Sbjct 97263 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 97204 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || ||||| || || ||||| |||||||| || || ||| |||||| |||| Sbjct 97203 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 97144 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || ||||| || || ||||| |||| ||||||| ||| ||||| Sbjct 97143 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 97084 Query 192534 CATTTTATTA 192543 |||||| ||| Sbjct 97083 CATTTTTTTA 97074 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| || || || | ||||| || || ||| || || ||| Sbjct 97538 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 97479 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||||||| |||||||| ||||| || | || || ||||| Sbjct 97478 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 97419 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || || || || | ||| ||||||||| Sbjct 97418 GGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCT 97359 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || || || || | || |||||||| Sbjct 97358 ACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 97309 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | || | || || ||| || || ||| Sbjct 97994 ATACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 97935 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||| ||| |||||||||||||| | | || |||||||| Sbjct 97934 GAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 97875 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||||| || |||| ||||| || || Sbjct 97874 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 97815 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||||||||| || || | ||| |||||||| Sbjct 97814 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACAAAAATCTGCAT 97765 >seq12 Length=658291 Score = 113 bits (124), Expect = 9e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||||||||| | | | || | || ||||||| ||| || ||| || || Sbjct 86132 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 86073 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| | |||| | || |||| ||| ||||||||||| || || | ||||| || Sbjct 86072 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 86013 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || |||||||| || ||||| || || || ||||| || | || || || Sbjct 86012 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 85953 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | ||||| || ||||| ||||| || || | || ||||||||||| Sbjct 85952 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85896 >seq4 Length=489129 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | | || || || ||||||| ||| || ||| || || ||||| Sbjct 409859 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 409918 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| | | |||||| ||||| || Sbjct 409919 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 409978 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || || || || |||| || || || || || Sbjct 409979 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 410038 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | || || || ||||| || | || || | || || |||||||| Sbjct 410039 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 410089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477855679500