Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016545.1_202016-02-08] 170 sequences; 9,365,723 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq27 248 2e-60 seq4 89.7 1e-12 >seq27 Length=271127 Score = 248 bits (274), Expect = 2e-60 Identities = 539/801 (67%), Gaps = 7/801 (1%) Strand=Plus/Plus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||||||| || || | |||||||| || || |||||||| |||| ||| | Sbjct 181543 GAACGTCCTCAACACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCA 181602 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 ||||||||| |||| | | | ||| | ||| | | |||||| ||||||| Sbjct 181603 AGAGTTATTGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACT 181662 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 || |||||||| || || | |||| || | || || |||||| | | || Sbjct 181663 CTGTTTAACGCTGGTACCCCTCACCCACAAATGTCATCATG-TTTCTTAGTTGCCATGCG 181721 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| || |||||||| ||||| ||| || | || ||| |||| | || || |||| Sbjct 181722 GGATGACTCAATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAAC 181781 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| ||||||||| | ||| ||||| ||||||| | | |||| | | || || Sbjct 181782 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 181841 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | ||| || |||||||| | || ||||||||| ||||||| Sbjct 181842 TACTAACGGTACTTCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCG 181901 Query 110723 ATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | ||||||||||| | | ||| |||||||| | || | || || || Sbjct 181902 TTATGTTGACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATG 181961 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | || || |||| ||| | || ||||||| || || || || || || Sbjct 181962 GCATGCCGACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAG 182021 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||| | || ||||| || ||||||| | ||| | ||||||||| | || || | Sbjct 182022 AGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACA 182081 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||||| ||| | || | | ||| | ||||||| || | || || ||||| Sbjct 182082 GAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGG 182141 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAA 111018 | | || ||||| || | ||||||| ||| ||||| ||||| | | ||||| | Sbjct 182142 AGATGAATTTGAGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAAC-CA 182200 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||| ||| | ||||||| | |||||||| ||||| |||||||| ||||| | Sbjct 182201 TCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTACTCCAT 182260 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || ||||||| ||| | ||| ||| |||| || | ||| || || |||| Sbjct 182261 TCATGCTGTATAAGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTGTCATTA 182320 Query 111139 AGTCTAGTAATTTGTGCTGTG 111159 | || ||| | ||||||| Sbjct 182321 AATCCTCTAACCTTTGCTGTG 182341 >seq4 Length=489129 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| ||| || ||||| || || || || | ||||| ||| | ||||||||| Sbjct 113084 AGACACCTGATGGATGATGATCCTGTCCTTTTTAACCGTCAACCGTCATTACATAAAATG 113143 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || |||||||| |||| |||||||||| | | | || ||| || ||||| || | Sbjct 113144 TCCATGATGGCACATAGAGTCAAAGTAATGCCCTACTCTACTTTTAGACTAAATTTATCT 113203 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || || ||||| ||||| || || |||||||||||| | || || || ||| Sbjct 113204 GTTACATCACCGTACAATGCTGATTTCGACGGTGATGAAATGAATTTACACGTTCCACAA 113263 Query 305486 TC 305487 || Sbjct 113264 TC 113265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810214973370