Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016555.1_202016-02-08] 142 sequences; 9,351,707 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27 178 2e-39 seq1 105 1e-17 >seq27 Length=164711 Score = 178 bits (196), Expect = 2e-39 Identities = 555/852 (65%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068 ||| || || || ||| |||||||||| |||| | || ||||||||||| | || || Sbjct 106848 GTACCACGATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGA 106789 Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128 | || ||| ||||| || | || ||| | | |||| ||| || | ||| | Sbjct 106788 AATAGACCTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATT 106729 Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188 || || ||| | | ||||||||||| | ||| || || || ||||| || || | Sbjct 106728 CTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTT 106669 Query 125189 GTTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247 | || | ||| | ||| || | | |||| || | ||||||||||| |||| Sbjct 106668 GGTGGAAAATTTCAGTGCTGAGGTTCAAC-TTCCCGAAGCAAAATGCTTTTACGGTTTCC 106610 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 | |||||||| |||||| | ||||| || | ||||| |||||||| | ||||| Sbjct 106609 AGATCATGATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCA 106550 Query 125308 GCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 ||||| || | | || || || || ||||| || | || | ||| Sbjct 106549 AAGATCCAAAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 106490 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 |||||||| | |||| || | ||||| ||| ||| | | | || ||| || | Sbjct 106489 AAAAGGCTGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTT 106430 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || ||||| || || ||||| ||||||||||| || |||||| | ||||| | Sbjct 106429 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCT 106370 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | |||||| | || |||||||| || |||| | || ||| |||| | ||| Sbjct 106369 GGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 106310 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| ||||| ||||||||| || || || | | ||| | | | Sbjct 106309 ACGAGGGATTACACACTGACTTTGC-------TTGCTT-GCTATTTTCT-CATTTAAACA 106259 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 ||| |||| || |||| || || ||| | || || || || ||| ||| || Sbjct 106258 ATAGAGCCAGTGAGGAAATCGTTGAAAAGATTATCACAGAGGCTGTCGAGATCGAAAAAA 106199 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 || | || || | || || ||| | | | || |||||||||| | |||||| Sbjct 106198 GGTACTTCACAGACGCTCTTCCTGTCTCCTTACTGGGGATGAACTGCAGCTTGATGTGCC 106139 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTT 125784 |||| | ||||| || || || | |||||| || | | ||| | ||| | | Sbjct 106138 AGTATGTTGAGTTCGTTGCTGACAGACTACTG--GTAGCT-CTGGGCAACAAAAAGGTGT 106082 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||||| ||| ||||| ||||| |||||| | ||| || | | ||||| ||||||| Sbjct 106081 ACAACGTCAACAATCCATTTGACTTCATGGAGAACATTTCTTTGGCCGGTAAAACCAACT 106022 Query 125845 TTTTCGAGAAGA 125856 | ||||| |||| Sbjct 106021 TCTTCGAAAAGA 106010 >seq1 Length=591225 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||| ||||||||||||||||||| || ||| | || | || | ||||| |||| Sbjct 279575 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 279634 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 || |||||||||| | || || || |||||||| | | | ||||| ||||| Sbjct 279635 TGTAAGACAGACTACACTGGACAAGGGTTTGATCAACTTTCTAGGGTAATTGAAACTCTT 279694 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246 ||||||||| || || || || | ||| | ||||||| ||| ||||||| | Sbjct 279695 CGTACCAATCCATATGACAGAAGAATAATCATGAGTGCATGGAACCCTCCAGATTTTGAG 279754 Query 70247 CAAATGGCACTACCACCGTGTCA 70269 ||||||| || ||||| ||||| Sbjct 279755 AAAATGGCTCTCCCACCCTGTCA 279777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057884619920