Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016555.1_202016-02-08]
142 sequences; 9,351,707 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq30 150 9e-32
seq8 111 8e-20
>seq30
Length=271157
Score = 150 bits (166), Expect = 9e-32
Identities = 344/511 (67%), Gaps = 10/511 (2%)
Strand=Plus/Plus
Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949
||||| |||| | |||||| |||| || || ||| | | ||| || | ||| || |
Sbjct 89048 TTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGA 89107
Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009
|||||| || ||||| ||||| ||||| || || ||||| || || ||||| |
Sbjct 89108 TCCACAAAGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAA 89167
Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069
||| | ||| |||| || || | |||||||| || || || | |||||| |||
Sbjct 89168 TATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAG 89227
Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129
| ||| |||||||| || || || | ||||| | ||||| || ||| |||||
Sbjct 89228 GACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTG 89287
Query 26130 GAACTAAT-CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188
||| |||| ||| | ||| ||||| || | | ||| | ||||||||| | | ||||
Sbjct 89288 GAA-TAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATA 89346
Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAA 26246
| ||| || | ||| ||||||||||| ||| || || ||||| || | |||
Sbjct 89347 TTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAA 89406
Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306
|||||| |||| |||| || ||| | ||| | | ||| ||||| || || |
Sbjct 89407 --GTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACA 89464
Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366
||| | |||| || || | ||||| | || || | |||||||| |||| |||
Sbjct 89465 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATA--CTT 89522
Query 26367 C--ACTCAAAGCTGTATAAGTTTCAAGAACT 26395
| ||||| | |||||||||||| ||||
Sbjct 89523 CTGACTCATAAAGTTATAAGTTTCAATAACT 89553
>seq8
Length=658282
Score = 111 bits (122), Expect = 8e-20
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965
||| || |||| | || ||||| |||||||| | || |||||||||| || || ||
Sbjct 588204 CCAGTCCTCATTCTTTTCGACTTTTTCCATAAAAAGGTCGGGAATCCACAAAGCGTAGAA 588145
Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025
||||||||| ||||| || || || || |||||||||||| | | | || ||||||||
Sbjct 588144 TAAATCTCTGGCTCTGATCTCCTCCTTGCCGTGATTCTTTCTCAAGTTCAACAAATCAAA 588085
Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAA 26061
| ||| ||||||||| |||| ||| || |||||
Sbjct 588084 CACTTCTTCGTGCCATGGCTCTAGATAAATGGCAAA 588049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039562082650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |