Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016555.1_202016-02-08] 142 sequences; 9,351,707 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq27 203 5e-47 >seq27 Length=164711 Score = 203 bits (224), Expect = 5e-47 Identities = 568/856 (66%), Gaps = 24/856 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || || || || |||| || || Sbjct 105988 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATG 106047 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || | ||||| ||| | | Sbjct 106048 TTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAG-CTAC 106106 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | || ||| || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 106107 CAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAG 106166 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || ||| ||||| || | | | ||| || ||||| |||| |||| | || Sbjct 106167 TAAGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGAT 106226 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAAC 18158 || ||| || ||||| || | | ||| | | | | | || ||| || | Sbjct 106227 AATCTTTTCAAC----GATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGC 106282 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||| ||||||||||| || || |||||| | || | || || || || || | Sbjct 106283 AAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 106342 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | |||||| || || | ||| || || || || ||| | |||||||| | Sbjct 106343 CTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGA 106402 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAG 18336 |||||||||| ||| ||||| || | || | |||||| || | || | | | |||| Sbjct 106403 TACCCTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAATGCA--TCGTCATCAG 106459 Query 18337 -TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||| | ||||| || | | ||||| || || |||| || |||| Sbjct 106460 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 106519 Query 18396 TAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | |||| ||| || ||||| | |||||| || ||||| || || | ||| || || Sbjct 106520 TGAACAGGAAT--TCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTA 106577 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| | ||||| ||||| |||| ||||| || | || ||||| Sbjct 106578 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGG 106637 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| ||| || | |||| |||| ||||| || ||||| || |||||||||| | Sbjct 106638 AAGTTGAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGG 106696 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTG 18628 || || || || | || | | | ||||| |||||||||||| || | |||| Sbjct 106697 CAGCAAAGAAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTA 106755 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| |||| | ||| || || || | ||| || | |||||||| || | |||| Sbjct 106756 TTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCG 106815 Query 18689 GCCTGTTTGTACATTT 18704 ||||| |||||||||| Sbjct 106816 GCCTGCTTGTACATTT 106831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870700927200