Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016555.1_202016-02-08] 142 sequences; 9,351,707 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq30 215 2e-50 seq9 102 2e-16 seq40 100 8e-16 seq4 98.7 3e-15 seq27 89.7 2e-12 >seq30 Length=271157 Score = 215 bits (238), Expect = 2e-50 Identities = 626/947 (66%), Gaps = 25/947 (3%) Strand=Plus/Plus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| ||||||| |||| ||||| || |||||||| | | |||||| ||||| Sbjct 88755 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 88814 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 |||||||| |||||||| || ||| || || ||||||||||||| ||| |||| Sbjct 88815 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 88874 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 |||||||||||| || || ||| |||| || || || || | ||||| || || || Sbjct 88875 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 88934 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGACTCATATTTCA 155820 ||| || | |||| || || | |||| | | |||||| || ||| | Sbjct 88935 GTACCAAAGCTTTTGGGCTTTGATG-GTTTGTCTTCCACGACCTTCCTTTTCGTATCTTT 88993 Query 155821 TATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGG----CACTTAT 155874 |||| ||| || || || || || || || ||||| ||||| Sbjct 88994 CGTACAA--TTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTT-- 89049 Query 155875 CGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAATACATCACTC 155933 || | ||||| | |||| ||| | | | ||| | | ||| || | |||| Sbjct 89050 --GGAGAGAACAGGGTCCAATCGCCATT-CTGTTCTACTCTTTTCATGAACAGATCAGGG 89106 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCG 155992 ||| | ||| ||| | ||| || || | ||| |||||| | || || ||||| || Sbjct 89107 ATCCACAAAGCGGGGAATAAGTCTCTAGC-TCTGATCTCCTCTTTACCATGGTTCTTACG 89165 Query 155993 TAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC 156052 | || | ||| | || || | ||| |||||||| |||| |||||| ||| Sbjct 89166 AATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACC 89225 Query 156053 ATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCAT 156109 | | ||| ||||| || || ||||| |||||||| || |||||||| | | ||| Sbjct 89226 AGGACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCAT 89285 Query 156110 AGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAAC 156169 |||||||||||||| ||||| || || || || ||| | || || | | |||| Sbjct 89286 TGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAAT 89345 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 ||||||||| || | ||||| ||||| | ||| || ||| ||| |||||||| | Sbjct 89346 ATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAA 89405 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 ||||| | |||| |||||||| || ||||| ||| | | || | || || | Sbjct 89406 AGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACAT 89465 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 ||| || | || || |||||||| || || ||||| | |||||| | |||||||| | Sbjct 89466 TTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTG 89525 Query 156350 AGACATATAATCGTATGTCTCCTTAA-TCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408 | |||| | | || || || ||| |||| ||| | | || ||||| | ||||| Sbjct 89526 ACTCATAAAGTTATAAGTTTCAATAACTCTT-GCAATGTCATCACCATGAATGCCGATAG 89584 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGG 156467 || | ||| || || |||||||| ||| ||| || | |||| ||||| ||||||| Sbjct 89585 CAACACGCATAATCAAGTGTTGAGGACGTTCTGCAA-CATTACCATTAATTCTCAGAAGG 89643 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || | | ||||| || || || || || || | | || |||| || Sbjct 89644 TAAGATCTTTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTC 89690 >seq9 Length=317584 Score = 102 bits (112), Expect = 2e-16 Identities = 380/579 (66%), Gaps = 30/579 (5%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||||||||| || | | ||||||||||||| || || | |||| ||| | || Sbjct 83214 ACACACATGTACTCGGAAAGCATCAGATGCTTCCATTAATCTTTCCTTCAAGAAACCAGC 83155 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||| | ||||||||| || | ||||| || |||||||||||||||||||| || Sbjct 83154 GGCACCGTGAGCAATCATACAGTCTCTTTCCATCTCTCCGAAACGAAGACCACCATCACG 83095 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT-GAGATTAACCATAGGACCGATGGAGCGGCTAT 251602 | ||||| || |||| || | || ||| | | ||| || ||| | | || Sbjct 83094 GGATCTACCTTCTACAGGTTGTCTGGTCAAGACT-TGTACAGGTCCTCTGGCTCTGGCAT 83036 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGC 251662 | |||||||| |||||||| | || | |||||| ||| || || | ||| | | Sbjct 83035 GAATCTTATCATCCACCATATGTCTCAGTCTCTGGTAATATGTTGGTCCAAAGAATA-CC 82977 Query 251663 TCGAAGGCAT---TTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 | | | ||| || | ||||| | | || ||||| ||||| ||| |||||| Sbjct 82976 TGG--GCCATTAATTTTTTACCAGTGTGTCCATTGTACATTACTTCAAATCCTCTAGATT 82919 Query 251720 CATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAAC 251776 ||| ||| | || | || | ||| | || ||| | || ||| || |||| Sbjct 82918 GATACCCATTATCCCTCAGAAGGTTGGAAACCGCAT--CCACTGTTAAATCTG-TAAA-- 82864 Query 251777 TGGTG--CCGTCTCCGTAAAGAC--CCATTTGAATCAAC---ACTTTGCCTAAAAGTGTC 251829 ||||| |||| || | | || | | | ||| |||| ||| || ||| | Sbjct 82863 TGGTGTAGCGTCACCTTCATAACCTCTAATAGAACCAACCTTACTCAGC--AAA---CAC 82809 Query 251830 TCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCG 251889 || | | || || | ||||||||| ||||||||||| || || || || | ||| Sbjct 82808 TCAATTAAGTGCGCAACCGTCATACGAGAAGGAATAGCATGTGGGTTAATAATCAAATCG 82749 Query 251890 GGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGT 251948 || | || || ||| |||| |||||||| | | | | |||| | ||||| || Sbjct 82748 GGAACGATACCCTCTGCACTGAATGGCATATCTTCGTGC-CTATAAGTAACACCAATGGT 82690 Query 251949 TCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || |||||||| || |||||||||||||| Sbjct 82689 ACCCTTCTGACCGTGACGGGAGGCAAACTTATCACCAAT 82651 >seq40 Length=94679 Score = 100 bits (110), Expect = 8e-16 Identities = 309/470 (66%), Gaps = 21/470 (4%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAAT 288942 || || | ||| ||||||||||| | ||||| ||||||| | || | | ||| Sbjct 57020 TCCAAAACATCAGCTCTGTTTGTACCAGCCAAGACAACAACATGGTCAGAACTATCAAAA 56961 Query 288943 CCATCCATACTTGT-TAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC- 289000 |||||||| || | || | ||||| | ||| || ||||||| || ||||| Sbjct 56960 CCATCCAT-CTCGACTAGTAGCTGATTTAAAGTTGCCTCTTTTTCATCGTT---ACCTCC 56905 Query 289001 --TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | ||| ||| | | || | || | ||| | ||||||||||| |||| ||| || Sbjct 56904 CATGGAACCACTCTTA---CTACGTTCTCGACCGATCGCATCAATTTCATCAACGAATAT 56848 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCA 289116 | | | || | | | ||| || |||| |||||| || | || ||||| |||||| Sbjct 56847 GATAGATGGCGCCATCTTTCTAGC--TTGCTGAAATAAATCACGAACTCGGGAAGCTCCA 56790 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCT 289176 | ||| ||| ||||||| ||||| |||||| | || || | |||| || ||| Sbjct 56789 ACACCCACAAACATTTCCACAAACTCAGAACCCGAAACAGACAAAAATGGAACTCCAGCT 56730 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 ||||| || |||| |||| || | ||||||||| || || || || | | | ||| Sbjct 56729 TCGCCAGCAGTTGCCTTCGCTAGCAATGTCTTACCAGTACCTGGAGGAC---CAGAAAGA 56673 Query 289237 A---CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 | | || |||| | |||||| || || |||||||| ||| |||| | || Sbjct 56672 ATTGCACCTCTTGGAATTTTTGCTCCTAGTTTCTCATATTTCTTAGGATTCTTCAGGAAC 56613 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || | |||| || ||| | ||| || ||||| || || || || || Sbjct 56612 TGAACGAATTCCATAATTTCTTCTTTAGCTTCATCGCAACCCGCCACGTC 56563 >seq4 Length=598418 Score = 98.7 bits (108), Expect = 3e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||| | ||||||||||||||||||||| ||| || ||||| |||||||||||||| | Sbjct 374824 CTTCACTAAACGACGCTGAATATAACCTGTTTCAGCAGTTTTCACAGCTGTATCAATCAA 374883 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||| |||||||| |||| || || ||||| | ||||| ||| Sbjct 374884 ACCTTCACGACCAGCCATGGCGTGAAAGAAGAACTCTTGCGG 374925 >seq27 Length=164711 Score = 89.7 bits (98), Expect = 2e-12 Identities = 288/436 (66%), Gaps = 22/436 (5%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAG--GAACACGGTTTATGG 133289 || || |||||||| ||| |||||||| |||||| || | ||| | || | | Sbjct 106709 GCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAAAAT--TTCAGTG 106652 Query 133290 GAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATA 133349 || |||||||| ||||||| |||||| || | ||||| |||||| || | Sbjct 106651 CTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACA 106592 Query 133350 TCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG- 133408 | || || || || || || |||||||||||||||||||| |||| ||| Sbjct 106591 TTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGA-----TCCAAAAGA 106537 Query 133409 --CACAA--ACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACT 133463 | || || ||||| |||| | | || |||| ||||| ||| | || |||||| Sbjct 106536 GTCTGAATTCCTGTTCAATGCCA-TCGAGACCATTCCATGTATCAAAGAAAAGGCTGACT 106478 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 |||| || | |||||| || | ||| || ||| ||| | ||||| || | Sbjct 106477 GGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCG 106418 Query 133524 CTGTAGTAGAGGGCA--tttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAA 133580 ||| || ||||| | || ||||||| | | || ||| ||||| || ||| | || | Sbjct 106417 CTGCTGTTGAGGGTATCTTCTTTTCAG-GAT--CTTTTGCTTCTATCTTCTGGTTGAAGA 106361 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 || | ||| | | || || || || || || || ||||||| || ||||||| | Sbjct 106360 AGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGAT 106301 Query 133641 TTCACACCGAATTTGC 133656 | ||||| || ||||| Sbjct 106300 TACACACTGACTTTGC 106285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814922211854