Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016565.1_202016-02-08]
142 sequences; 9,352,642 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 9e-22
seq19 113 4e-20
seq8 104 2e-17
>seq4
Length=489118
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || |||||||| | |||||||| | ||||| | || |||||||| ||
Sbjct 79027 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 79086
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | ||| | || | ||| ||||| || || ||||| |||||||
Sbjct 79087 CGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGACC 79145
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || || ||||| || |||| | | ||| || || ||||
Sbjct 79146 AACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACA 79205
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || || || | || || || || || | ||||| ||
Sbjct 79206 ACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 79254
>seq19
Length=136700
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || ||||| | ||||| | || || ||||| ||
Sbjct 136588 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 136529
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| || | || | ||| ||||| ||||| ||||| |||||
Sbjct 136528 GATACTATTGATAACGTCA---AATCTAAGATTCAA-GACAAGGAAGGTATTCCTCCTGA 136473
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || || || ||| | ||||| | | | ||| | |||||
Sbjct 136472 CCAGCAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 136413
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||| |||||||| || || || || |||| || ||||| ||
Sbjct 136412 CAATATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGG 136362
>seq8
Length=658275
Score = 104 bits (114), Expect = 2e-17
Identities = 148/204 (73%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || ||||| || |||||||| | || || | ||||| |||||
Sbjct 572393 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 572334
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| ||||| ||||| || || ||| | || | ||| ||||| ||||| ||||| ||
Sbjct 572333 CTCCGACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGAATTCCTCC 572277
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||||||| || | |||||||| || || ||| | ||||| | | | ||| || ||
Sbjct 572276 TGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGA 572217
Query 25172 TTACAATATTCAAAAAGAATCCAC 25195
||||| || || || || || ||
Sbjct 572216 CTACAACATCCAGAAGGAGTCTAC 572193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327250071730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |