Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016565.1_202016-02-08] 142 sequences; 9,352,642 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq34 123 2e-23 >seq34 Length=271129 Score = 123 bits (136), Expect = 2e-23 Identities = 579/915 (63%), Gaps = 16/915 (2%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||||| || |||| | || ||||| || | || |||| | ||| | Sbjct 181483 TACTTTGGATTCAAGACCTTGGAAAGATCTTACCTTCTGAGAATTAATGGTAATGTTGCA 181542 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 || || || || || || | ||||| || || ||||| ||||| || | ||||| | Sbjct 181543 GAACGTCCTCAACACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCA 181602 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGAC 93902 | ||| | ||| | ||| | | ||| | || |||| || | || || Sbjct 181603 AGAGTTATTGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATG-CCTCTCCTAC 181661 Query 93903 CCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAA 93962 ||||| ||||| || ||||| ||||| ||||| || |||||| | | | | Sbjct 181662 TCTGTTTAACGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCG 181721 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||||| || || |||| ||| | | ||||| ||||| ||||| ||| Sbjct 181722 GGATGACTCAATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAAC 181781 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 || || ||||| || | | || | | ||||||| || |||||||| || Sbjct 181782 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 181841 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 ||| || || || || || || | | || ||| | |||||||||||||| | || || Sbjct 181842 TACTAACGGTACTTCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCG 181901 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 || || ||||| |||||| | | ||| | || || | || | ||||| || Sbjct 181902 TTATGTTGACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATG 181961 Query 94203 GCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG-- 94260 ||| || ||| | || ||||| || | || |||||||| || || || |||| Sbjct 181962 GCATGCCGACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGA---GGAGAT 182018 Query 94261 -AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGA 94319 || || |||||| | ||| |||| | ||| | || || || || |||||| | || || Sbjct 182019 CAGAGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGA 182078 Query 94320 GAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTG 94379 | || || |||| || || | ||| | |||| ||| || || ||||||| | Sbjct 182079 ACAGAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTA 182138 Query 94380 TGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAG-- 94437 |||| ||||| || ||||| | | |||||| | || | | | ||||| Sbjct 182139 TGGAGATGAATTTGAGGAATTGTACGAAAGATACGAA----AAGGAAGGTCGTGGAAGAC 182194 Query 94438 --GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTA 94495 || | || ||||| ||| | ||| | || | ||| || || |||| Sbjct 182195 AAACCATCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTA 182254 Query 94496 CGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 | || | ||| ||| ||||| || ||| || | |||||| || || | || | Sbjct 182255 CTCCATTCATGCTGTATAAGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTG 182314 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 | || || ||| || || ||| || ||||| || || |||| ||||| |||| || Sbjct 182315 TCATTAAATCCTCTAACCTTTGCTGTGAAATTGTTGAATACTCTTCCCCGGAAGAGACTG 182374 Query 94616 CTGTGTGTAACCTGG 94630 |||| |||||| ||| Sbjct 182375 CTGTCTGTAACTTGG 182389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722321866320