Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016565.1_202016-02-08] 142 sequences; 9,352,642 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34 131 2e-25 seq30 100 3e-16 >seq34 Length=271129 Score = 131 bits (144), Expect = 2e-25 Identities = 389/600 (65%), Gaps = 0/600 (0%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || ||||||| ||||| || ||| | | |||| || || || || Sbjct 181564 ATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCAAGAGTTATTGAAACTTATAAC 181623 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 | ||||| ||||||| ||||| || || | || || || || ||||| ||||| Sbjct 181624 TTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAACGCTGGTACCCCT 181683 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 |||| || ||||| |||||| |||| || ||| ||||||| ||||| ||||| Sbjct 181684 CACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTCAATTGAAGGCATT 181743 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || | ||||| || || |||||||| | || || || || | ||| Sbjct 181744 TACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGGAATTGGTTTGCAC 181803 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 ||||| || | | || | || ||| || ||||| | | ||| Sbjct 181804 ATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAATGGT 181863 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 || | |||||| | | |||||||||||||| || | || || |||| || || | Sbjct 181864 ATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTTGACCAAGGTGGTAAC 181923 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 ||||| || | || || | ||| | ||||||||||| || ||| || | | ||| Sbjct 181924 AAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCCGACATCTTTGCCTTC 181983 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 | || | || |||||| ||| | |||||||| | | | ||| | ||| | || Sbjct 181984 ATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCTAGAGACTTATTCCCCGCT 182043 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 |||||||| || || || |||||| | | || || || | | || ||| |||| | Sbjct 182044 TTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACAGAATGGCGATTGGACCCTGTTC 182103 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 | || ||| |||||||| |||||||||| || || | || | || |||||| Sbjct 182104 TCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGGAGATGAATTTGAGGAATTGTAC 182163 >seq30 Length=426252 Score = 100 bits (110), Expect = 3e-16 Identities = 202/292 (69%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 || ||||||||||| ||||| | |||| |||| | |||| ||||| ||||| Sbjct 106694 ATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGTCT 106635 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | |||||| |||||| |||| | | || | | | ||| |||| || || ||||| Sbjct 106634 GAATTCCTGTTCAATGCCATCGAGACCATTCCATGTA-TCAAAGAAAAGGCTGACTGGGC 106576 Query 59945 CATGCAGTGGATGAGTCCTG--GA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 |||| ||||| | || || |||| || || ||||| | | || || || || Sbjct 106575 CATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGC-TG 106517 Query 60002 C-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 | || || || |||||||| || || || || | |||| |||||| | || ||| | | Sbjct 106516 CTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAG 106457 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 | |||||||| || ||| |||||||| ||||| |||| | | |||||||| Sbjct 106456 GTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 106405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523826368480