Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016565.1_202016-02-08]
142 sequences; 9,352,642 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq20 134 9e-27
seq19 125 4e-24
seq8 116 2e-21
seq4 100 2e-16
>seq20
Length=97383
Score = 134 bits (148), Expect = 9e-27
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| |||||||| ||||| ||||| ||||| |||| |||||||
Sbjct 100 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCC 159
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| |||||||| || ||||| || || | || ||||| |||
Sbjct 160 AGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGA 219
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| | ||| || || ||| |||||| |||||| || | || || || ||
Sbjct 220 ATCTTG-GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTT 278
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
||| |||| ||||| |||||||||||||| ||
Sbjct 279 ACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 311
>seq19
Length=136700
Score = 125 bits (138), Expect = 4e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536
|| || |||||||| | || ||||| || |||||| ||||||||||| || |||||
Sbjct 136359 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 136418
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| |||| ||||||| ||||| ||||| || || || ||||| || ||||| ||
Sbjct 136419 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 136478
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655
|| | || ||||||||| ||| || | ||| ||| || ||| || ||| |||
Sbjct 136479 GGAATACCTTCCTTGTCT-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTC 136537
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| |||| || || || |||||||||||
Sbjct 136538 TACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 136588
>seq8
Length=658275
Score = 116 bits (128), Expect = 2e-21
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || || || |||| ||||||| ||||| ||||| |||||
Sbjct 572198 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 572257
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| ||||| |||||||| || || | ||| ||||||||| ||||| | || ||
Sbjct 572258 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACAT 572316
Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| | ||| ||||||| ||| || || ||||||||||| || || |
Sbjct 572317 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGA 572376
Query 34694 CAAAAATCTGCATGTT 34709
| ||||||||||| ||
Sbjct 572377 CGAAAATCTGCATTTT 572392
>seq4
Length=489118
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || | ||| ||||||||| ||||| || || || | |||| | || ||
Sbjct 79236 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 79177
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||| ||||| ||||| || | |||||||||||| || || | |||||||||||| ||
Sbjct 79176 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTG 79118
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| || | || ||| | ||| ||||| |||||| |||| ||| || || ||
Sbjct 79117 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTT 79058
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||||| | || || || ||||| ||||| |||
Sbjct 79057 ACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 79024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729055321086
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |