Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016575.1_202016-02-08] 165 sequences; 9,355,305 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 154 3e-32 seq22 140 6e-28 seq19 129 1e-24 seq4 98.7 2e-15 >seq23 Length=213739 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| |||||| || || | ||| | || || |||||| ||||| || Sbjct 340 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGA 281 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || |||| |||| ||| |||||||| || || || | || |||||||| || Sbjct 280 AAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGG 221 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || ||| ||| || ||| ||||||||||| || ||||| Sbjct 220 AATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTAC 161 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || |||||||||| || || | ||| |||||||| Sbjct 160 CTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113 >seq22 Length=162238 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | || || || || || | || | || || || || ||||| Sbjct 162160 ATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCA 162101 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||| ||| ||||||||||||||||| | || |||||||| Sbjct 162100 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGA 162041 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||| |||||| ||||| ||||| || || Sbjct 162040 GGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCC 161981 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076 || || ||||| || || ||||| |||| ||||||| || ||||||||||| ||| Sbjct 161980 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTTTTTA 161924 >seq19 Length=629025 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || | || | || ||||||| ||| || || || || Sbjct 86119 ATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAG 86060 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || || |||| |||| ||| |||||||||||||| || | ||||||||| Sbjct 86059 TCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCA 86000 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| || ||||| || || || ||||| || || || || || Sbjct 85999 GGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGAC 85940 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | ||||| || ||||| ||||| || || | ||| ||||||||||| Sbjct 85939 TCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85884 >seq4 Length=372207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || | || || || ||||||| ||| || || || Sbjct 292947 TTCTTACCACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTG 293006 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || | | ||||||| Sbjct 293007 TAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGG 293066 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 ||||| || ||||| || || || || || || || || || ||||| || || Sbjct 293067 TCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAA 293126 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || | || || || ||||| || | || || | ||| || |||||||| Sbjct 293127 GACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 293185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134133157000