Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016575.1_202016-02-08]
165 sequences; 9,355,305 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq22 134 9e-27
seq23 125 4e-24
seq19 116 2e-21
seq4 100 2e-16
>seq22
Length=162238
Score = 134 bits (148), Expect = 9e-27
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| |||||||| ||||| ||||| ||||| |||| |||||||
Sbjct 162139 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCC 162080
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| |||||||| || ||||| || || | || ||||| |||
Sbjct 162079 AGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGA 162020
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| | ||| || || ||| |||||| |||||| || | || || || ||
Sbjct 162019 ATCTTG-GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTT 161961
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
||| |||| ||||| |||||||||||||| ||
Sbjct 161960 ACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 161928
>seq23
Length=213739
Score = 125 bits (138), Expect = 4e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536
|| || |||||||| | || ||||| || |||||| ||||||||||| || |||||
Sbjct 342 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 283
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| |||| ||||||| ||||| ||||| || || || ||||| || ||||| ||
Sbjct 282 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 223
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655
|| | || ||||||||| ||| || | ||| ||| || ||| || ||| |||
Sbjct 222 GGAATACCTTCCTTGTCT-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTC 164
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| |||| || || || |||||||||||
Sbjct 163 TACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113
>seq19
Length=629025
Score = 116 bits (128), Expect = 2e-21
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || || || |||| ||||||| ||||| ||||| |||||
Sbjct 86078 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 86019
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| ||||| |||||||| || || | ||| ||||||||| ||||| | || ||
Sbjct 86018 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACAT 85960
Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| | ||| ||||||| ||| || || ||||||||||| || || |
Sbjct 85959 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGA 85900
Query 34694 CAAAAATCTGCATGTT 34709
| ||||||||||| ||
Sbjct 85899 CGAAAATCTGCATTTT 85884
>seq4
Length=372207
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || | ||| ||||||||| ||||| || || || | |||| | || ||
Sbjct 292974 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 293033
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||| ||||| ||||| || | |||||||||||| || || | |||||||||||| ||
Sbjct 293034 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTG 293092
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| || | || ||| | ||| ||||| |||||| |||| ||| || || ||
Sbjct 293093 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTT 293152
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||||| | || || || ||||| ||||| |||
Sbjct 293153 ACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 293186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728967098445
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |