Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08]
196 sequences; 9,355,338 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq28 251 7e-62
>seq28
Length=536101
Score = 251 bits (278), Expect = 7e-62
Identities = 571/853 (67%), Gaps = 7/853 (1%)
Strand=Plus/Minus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
||||| || ||| |||||| ||||| |||||||| |||||||| ||| || || ||
Sbjct 320157 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 320098
Query 13641 TCCATAAAATCAAATGGATTTATTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAG 13699
||||| || ||||||||| || ||||| | |||| || | || || ||| ||
Sbjct 320097 TCCATGAAGTCAAATGGA-TTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAG 320039
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
|| ||| ||||||| ||||||| ||| || |||| || || ||||| || | ||
Sbjct 320038 TAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAA 319979
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
||||||| | || || | |||||| || ||||||||| | |||||
Sbjct 319978 GGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAAT 319919
Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879
|| || || || | | | || |||| ||| ||| | || || |||||
Sbjct 319918 CTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAAA 319859
Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939
||| || | ||||| ||||| | |||||| || || || || || || ||||||||
Sbjct 319858 GTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 319799
Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999
| |||| || || ||||| || || | |||||| || || |||||||| || |||||
Sbjct 319798 GAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTC 319739
Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059
||| ||||| || || | || ||||| | ||| |||| | | | || |||||| |
Sbjct 319738 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCT 319679
Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119
| ||||| |||| |||| ||| ||| | || || || || ||||| || | |
Sbjct 319678 CATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAA 319619
Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179
||| |||||| | | | ||||| |||||||| || ||| || | || |||||
Sbjct 319618 TTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTG 319559
Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239
||||| ||||| ||||| ||||| ||||||||| | ||||| | ||| || ||
Sbjct 319558 AATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGAACCTC 319499
Query 14240 CG-AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298
| | | |||| |||| |||| |||||||| || ||||| ||| || ||||| || |
Sbjct 319498 AGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAGAAGG 319440
Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGATA 14355
| | | | || ||| ||| || | || ||| | | || ||||| || |
Sbjct 319439 CAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGTCATGCA 319380
Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415
|||||||| || |||| ||| ||| | |||||||| ||| | || | || ||||
Sbjct 319379 AATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCTTGTACA 319320
Query 14416 TTACCCATATTTC 14428
|| ||| || ||
Sbjct 319319 TTTGCCAGATATC 319307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479726824666400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |