Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08]
196 sequences; 9,355,338 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq28 178 2e-39
seq30 105 1e-17
>seq28
Length=536101
Score = 178 bits (196), Expect = 2e-39
Identities = 555/852 (65%), Gaps = 17/852 (2%)
Strand=Plus/Plus
Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||| || || || ||| |||||||||| |||| | || ||||||||||| | || ||
Sbjct 319300 GTACCACGATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGA 319359
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128
| || ||| ||||| || | || ||| | | |||| ||| || | ||| |
Sbjct 319360 AATAGACCTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATT 319419
Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188
|| || ||| | | ||||||||||| | ||| || || || ||||| || || |
Sbjct 319420 CTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTT 319479
Query 125189 GTTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247
| || | ||| | ||| || | | |||| || | ||||||||||| ||||
Sbjct 319480 GGTGGAAAATTTCAGTGCTGAGGTTCAAC-TTCCCGAAGCAAAATGCTTTTACGGTTTCC 319538
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
| |||||||| |||||| | ||||| || | ||||| |||||||| | |||||
Sbjct 319539 AGATCATGATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCA 319598
Query 125308 GCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367
||||| || | | || || || || ||||| || | || | |||
Sbjct 319599 AAGATCCAAAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 319658
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427
|||||||| | |||| || | ||||| ||| ||| | | | || ||| || |
Sbjct 319659 AAAAGGCTGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTT 319718
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || ||||| || || ||||| ||||||||||| || |||||| | ||||| |
Sbjct 319719 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCT 319778
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|| | |||||| | || |||||||| || |||| | || ||| |||| | |||
Sbjct 319779 GGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 319838
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607
||||||| ||||| ||||||||| || || || | | ||| | | |
Sbjct 319839 ACGAGGGATTACACACTGACTTTGC-------TTGCTT-GCTATTTTCT-CATTTAAACA 319889
Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
||| |||| || |||| || || ||| | || || || || ||| ||| ||
Sbjct 319890 ATAGAGCCAGTGAGGAAATCGTTGAAAAGATTATCACAGAGGCTGTCGAGATCGAAAAAA 319949
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|| | || || | || || ||| | | | || |||||||||| | ||||||
Sbjct 319950 GGTACTTCACAGACGCTCTTCCTGTCTCCTTACTGGGGATGAACTGCAGCTTGATGTGCC 320009
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTT 125784
|||| | ||||| || || || | |||||| || | | ||| | ||| | |
Sbjct 320010 AGTATGTTGAGTTCGTTGCTGACAGACTACTG--GTAGCT-CTGGGCAACAAAAAGGTGT 320066
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||||| ||| ||||| ||||| |||||| | ||| || | | ||||| |||||||
Sbjct 320067 ACAACGTCAACAATCCATTTGACTTCATGGAGAACATTTCTTTGGCCGGTAAAACCAACT 320126
Query 125845 TTTTCGAGAAGA 125856
| ||||| ||||
Sbjct 320127 TCTTCGAAAAGA 320138
>seq30
Length=584121
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||| ||||||||||||||||||| || ||| | || | || | ||||| ||||
Sbjct 279576 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 279635
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186
|| |||||||||| | || || || |||||||| | | | ||||| |||||
Sbjct 279636 TGTAAGACAGACTACACTGGACAAGGGTTTGATCAACTTTCTAGGGTAATTGAAACTCTT 279695
Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246
||||||||| || || || || | ||| | ||||||| ||| ||||||| |
Sbjct 279696 CGTACCAATCCATATGACAGAAGAATAATCATGAGTGCATGGAACCCTCCAGATTTTGAG 279755
Query 70247 CAAATGGCACTACCACCGTGTCA 70269
||||||| || ||||| |||||
Sbjct 279756 AAAATGGCTCTCCCACCCTGTCA 279778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057384404960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |